miRNA display CGI


Results 21 - 40 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24318 5' -56.8 NC_005263.2 + 11897 0.66 0.548899
Target:  5'- gGCGCCGGgcGCCuGcGCGCuGGCGUc -3'
miRNA:   3'- aCGCGGUCaaCGGcCaCGUG-CUGUAc -5'
24318 5' -56.8 NC_005263.2 + 40979 0.66 0.592717
Target:  5'- cGaCGCCAca-GUCGGUcGCACGGCAg- -3'
miRNA:   3'- aC-GCGGUcaaCGGCCA-CGUGCUGUac -5'
24318 5' -56.8 NC_005263.2 + 37238 0.68 0.454827
Target:  5'- cGCGCCGG-UGCCGaGUuccGCcGCGACGc- -3'
miRNA:   3'- aCGCGGUCaACGGC-CA---CG-UGCUGUac -5'
24318 5' -56.8 NC_005263.2 + 92 0.66 0.538092
Target:  5'- aGCGCCuGcccGCCGGUGC-CGGuaguCGUGu -3'
miRNA:   3'- aCGCGGuCaa-CGGCCACGuGCU----GUAC- -5'
24318 5' -56.8 NC_005263.2 + 19806 0.66 0.570706
Target:  5'- gGUGCCGGUcgcacgGCCGGUacuGCACaAgGUGa -3'
miRNA:   3'- aCGCGGUCAa-----CGGCCA---CGUGcUgUAC- -5'
24318 5' -56.8 NC_005263.2 + 20705 0.68 0.454827
Target:  5'- cUGCGCCGGUcgugacgcaGCCGGUcaGCGCGcCGg- -3'
miRNA:   3'- -ACGCGGUCAa--------CGGCCA--CGUGCuGUac -5'
24318 5' -56.8 NC_005263.2 + 37708 0.66 0.533789
Target:  5'- cGCGCCGGacccgcucgccgGCCGGcccgGCGCGugGc- -3'
miRNA:   3'- aCGCGGUCaa----------CGGCCa---CGUGCugUac -5'
24318 5' -56.8 NC_005263.2 + 41075 0.76 0.132741
Target:  5'- aUGCGCCAuccGUCGGcGCGCGACAUGc -3'
miRNA:   3'- -ACGCGGUcaaCGGCCaCGUGCUGUAC- -5'
24318 5' -56.8 NC_005263.2 + 24850 0.66 0.58169
Target:  5'- gGUGCCGGUgcgccaGCCGGcgGCuACGGCc-- -3'
miRNA:   3'- aCGCGGUCAa-----CGGCCa-CG-UGCUGuac -5'
24318 5' -56.8 NC_005263.2 + 9971 0.68 0.452833
Target:  5'- gUGCGaCCAG-UGCCGGgcaggccguucaGCAUGACGa- -3'
miRNA:   3'- -ACGC-GGUCaACGGCCa-----------CGUGCUGUac -5'
24318 5' -56.8 NC_005263.2 + 46838 0.67 0.495669
Target:  5'- cGCGCCAGgcggcgcGCCaaGGaGCACGuCAUGc -3'
miRNA:   3'- aCGCGGUCaa-----CGG--CCaCGUGCuGUAC- -5'
24318 5' -56.8 NC_005263.2 + 18210 0.7 0.361453
Target:  5'- aUGCGCgCAGUaucacacgcUGuCCGGccGCGCGACGUa -3'
miRNA:   3'- -ACGCG-GUCA---------AC-GGCCa-CGUGCUGUAc -5'
24318 5' -56.8 NC_005263.2 + 10390 0.66 0.557593
Target:  5'- cGCGCCGGgccgGCCGGcgagcggguccgGCGCG-CGUu -3'
miRNA:   3'- aCGCGGUCaa--CGGCCa-----------CGUGCuGUAc -5'
24318 5' -56.8 NC_005263.2 + 28949 0.7 0.352877
Target:  5'- cGCGCCGGcggaUGCaCGGU-CACGACGa- -3'
miRNA:   3'- aCGCGGUCa---ACG-GCCAcGUGCUGUac -5'
24318 5' -56.8 NC_005263.2 + 37937 0.71 0.312187
Target:  5'- cGcCGCCGGcaGCCGGUGCGCaACcgGc -3'
miRNA:   3'- aC-GCGGUCaaCGGCCACGUGcUGuaC- -5'
24318 5' -56.8 NC_005263.2 + 18953 0.71 0.296938
Target:  5'- cGCGCCGGUUcgagcgcaGCCG--GCACGACGUc -3'
miRNA:   3'- aCGCGGUCAA--------CGGCcaCGUGCUGUAc -5'
24318 5' -56.8 NC_005263.2 + 19902 0.66 0.559773
Target:  5'- cGUGCCuGUgaacGCCGGca-ACGGCAUGc -3'
miRNA:   3'- aCGCGGuCAa---CGGCCacgUGCUGUAC- -5'
24318 5' -56.8 NC_005263.2 + 2091 0.75 0.165837
Target:  5'- cGUGCCAGUUGUCGGUGUAauCGGgGUc -3'
miRNA:   3'- aCGCGGUCAACGGCCACGU--GCUgUAc -5'
24318 5' -56.8 NC_005263.2 + 2654 0.67 0.516706
Target:  5'- cGCGCCGG--GCUcgaGGUGCA-GGCGUGc -3'
miRNA:   3'- aCGCGGUCaaCGG---CCACGUgCUGUAC- -5'
24318 5' -56.8 NC_005263.2 + 42567 0.8 0.077113
Target:  5'- cGCGCCAggccGUUGCCGGc-CACGGCAUGa -3'
miRNA:   3'- aCGCGGU----CAACGGCCacGUGCUGUAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.