miRNA display CGI


Results 1 - 20 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24318 5' -56.8 NC_005263.2 + 42159 1.09 0.000551
Target:  5'- gUGCGCCAGUUGCCGGUGCACGACAUGa -3'
miRNA:   3'- -ACGCGGUCAACGGCCACGUGCUGUAC- -5'
24318 5' -56.8 NC_005263.2 + 37708 0.66 0.533789
Target:  5'- cGCGCCGGacccgcucgccgGCCGGcccgGCGCGugGc- -3'
miRNA:   3'- aCGCGGUCaa----------CGGCCa---CGUGCugUac -5'
24318 5' -56.8 NC_005263.2 + 92 0.66 0.538092
Target:  5'- aGCGCCuGcccGCCGGUGC-CGGuaguCGUGu -3'
miRNA:   3'- aCGCGGuCaa-CGGCCACGuGCU----GUAC- -5'
24318 5' -56.8 NC_005263.2 + 40979 0.66 0.592717
Target:  5'- cGaCGCCAca-GUCGGUcGCACGGCAg- -3'
miRNA:   3'- aC-GCGGUcaaCGGCCA-CGUGCUGUac -5'
24318 5' -56.8 NC_005263.2 + 22182 0.75 0.156926
Target:  5'- aGCGCCGGgcgaaCCGGUGCugG-CGUGg -3'
miRNA:   3'- aCGCGGUCaac--GGCCACGugCuGUAC- -5'
24318 5' -56.8 NC_005263.2 + 20882 0.74 0.200683
Target:  5'- cUGCGCCAGUgGCaggaGGcGCACGGgAUGa -3'
miRNA:   3'- -ACGCGGUCAaCGg---CCaCGUGCUgUAC- -5'
24318 5' -56.8 NC_005263.2 + 6128 0.72 0.26136
Target:  5'- --gGCCGGUaUGUCGGUGCGCGAUc-- -3'
miRNA:   3'- acgCGGUCA-ACGGCCACGUGCUGuac -5'
24318 5' -56.8 NC_005263.2 + 28191 0.7 0.320032
Target:  5'- gGCGCCuucugcaugccGUUGCCGGcguucacagGCACGGCGUc -3'
miRNA:   3'- aCGCGGu----------CAACGGCCa--------CGUGCUGUAc -5'
24318 5' -56.8 NC_005263.2 + 15569 0.69 0.413037
Target:  5'- cGCGCUgaacgccgaaugacGGUagcgcgGCCGGUGCACGAg--- -3'
miRNA:   3'- aCGCGG--------------UCAa-----CGGCCACGUGCUguac -5'
24318 5' -56.8 NC_005263.2 + 37238 0.68 0.454827
Target:  5'- cGCGCCGG-UGCCGaGUuccGCcGCGACGc- -3'
miRNA:   3'- aCGCGGUCaACGGC-CA---CG-UGCUGUac -5'
24318 5' -56.8 NC_005263.2 + 20705 0.68 0.454827
Target:  5'- cUGCGCCGGUcgugacgcaGCCGGUcaGCGCGcCGg- -3'
miRNA:   3'- -ACGCGGUCAa--------CGGCCA--CGUGCuGUac -5'
24318 5' -56.8 NC_005263.2 + 14079 0.69 0.370172
Target:  5'- cGCGCCGGcccaUGUCGGcugguaccggcUGCGCGGCGg- -3'
miRNA:   3'- aCGCGGUCa---ACGGCC-----------ACGUGCUGUac -5'
24318 5' -56.8 NC_005263.2 + 10547 0.83 0.046897
Target:  5'- uUGCGCgGGUUGUCGGccgucUGCGCGACGUGc -3'
miRNA:   3'- -ACGCGgUCAACGGCC-----ACGUGCUGUAC- -5'
24318 5' -56.8 NC_005263.2 + 32693 0.68 0.454827
Target:  5'- gUGCGUCAGcagGUCGGUcacgagcgcauGCACGGCGg- -3'
miRNA:   3'- -ACGCGGUCaa-CGGCCA-----------CGUGCUGUac -5'
24318 5' -56.8 NC_005263.2 + 44185 0.76 0.12906
Target:  5'- gGCGCUAGgccUGCCGGUGCAgaaaGACAc- -3'
miRNA:   3'- aCGCGGUCa--ACGGCCACGUg---CUGUac -5'
24318 5' -56.8 NC_005263.2 + 43583 0.7 0.361453
Target:  5'- aGCGCCGcacGUCGGUagagaauguGCGCGACGUGc -3'
miRNA:   3'- aCGCGGUcaaCGGCCA---------CGUGCUGUAC- -5'
24318 5' -56.8 NC_005263.2 + 31598 0.68 0.454827
Target:  5'- -uUGCCGGUuggucaUGCCGGU-CGCGACGg- -3'
miRNA:   3'- acGCGGUCA------ACGGCCAcGUGCUGUac -5'
24318 5' -56.8 NC_005263.2 + 37374 0.66 0.537015
Target:  5'- aUGCGCUcgAGUcUGCgucgcccUGGcUGCGCGACGUGc -3'
miRNA:   3'- -ACGCGG--UCA-ACG-------GCC-ACGUGCUGUAC- -5'
24318 5' -56.8 NC_005263.2 + 13302 0.76 0.148451
Target:  5'- cGCaGCCAGUUGUCGaUGUACGGCAUc -3'
miRNA:   3'- aCG-CGGUCAACGGCcACGUGCUGUAc -5'
24318 5' -56.8 NC_005263.2 + 14169 0.73 0.229332
Target:  5'- cGgGCCGGcgGCCGGUGUGCGcgagcuGCGUGc -3'
miRNA:   3'- aCgCGGUCaaCGGCCACGUGC------UGUAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.