miRNA display CGI


Results 1 - 20 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24318 5' -56.8 NC_005263.2 + 92 0.66 0.538092
Target:  5'- aGCGCCuGcccGCCGGUGC-CGGuaguCGUGu -3'
miRNA:   3'- aCGCGGuCaa-CGGCCACGuGCU----GUAC- -5'
24318 5' -56.8 NC_005263.2 + 802 0.68 0.425423
Target:  5'- cGUGCCGGccGCCGGcGCAgGACc-- -3'
miRNA:   3'- aCGCGGUCaaCGGCCaCGUgCUGuac -5'
24318 5' -56.8 NC_005263.2 + 2091 0.75 0.165837
Target:  5'- cGUGCCAGUUGUCGGUGUAauCGGgGUc -3'
miRNA:   3'- aCGCGGUCAACGGCCACGU--GCUgUAc -5'
24318 5' -56.8 NC_005263.2 + 2654 0.67 0.516706
Target:  5'- cGCGCCGG--GCUcgaGGUGCA-GGCGUGc -3'
miRNA:   3'- aCGCGGUCaaCGG---CCACGUgCUGUAC- -5'
24318 5' -56.8 NC_005263.2 + 3156 0.66 0.538092
Target:  5'- --gGCCAGcugGCCGGgcUGCACgGACGUa -3'
miRNA:   3'- acgCGGUCaa-CGGCC--ACGUG-CUGUAc -5'
24318 5' -56.8 NC_005263.2 + 6128 0.72 0.26136
Target:  5'- --gGCCGGUaUGUCGGUGCGCGAUc-- -3'
miRNA:   3'- acgCGGUCA-ACGGCCACGUGCUGuac -5'
24318 5' -56.8 NC_005263.2 + 8817 0.69 0.415875
Target:  5'- aUGCGCC---UGCCGGccGCuCGGCGUGc -3'
miRNA:   3'- -ACGCGGucaACGGCCa-CGuGCUGUAC- -5'
24318 5' -56.8 NC_005263.2 + 9082 0.69 0.39626
Target:  5'- cGUGCCAGUUcgggucgaucgGCCGGUuCACGaacacggGCAUGa -3'
miRNA:   3'- aCGCGGUCAA-----------CGGCCAcGUGC-------UGUAC- -5'
24318 5' -56.8 NC_005263.2 + 9127 0.67 0.527358
Target:  5'- aGCGgCGaUUGCCGGU-CGCGuCGUGg -3'
miRNA:   3'- aCGCgGUcAACGGCCAcGUGCuGUAC- -5'
24318 5' -56.8 NC_005263.2 + 9765 0.69 0.379034
Target:  5'- -uCGCCGGUcGCCGcGUGCACGGuCGc- -3'
miRNA:   3'- acGCGGUCAaCGGC-CACGUGCU-GUac -5'
24318 5' -56.8 NC_005263.2 + 9971 0.68 0.452833
Target:  5'- gUGCGaCCAG-UGCCGGgcaggccguucaGCAUGACGa- -3'
miRNA:   3'- -ACGC-GGUCaACGGCCa-----------CGUGCUGUac -5'
24318 5' -56.8 NC_005263.2 + 10390 0.66 0.557593
Target:  5'- cGCGCCGGgccgGCCGGcgagcggguccgGCGCG-CGUu -3'
miRNA:   3'- aCGCGGUCaa--CGGCCa-----------CGUGCuGUAc -5'
24318 5' -56.8 NC_005263.2 + 10547 0.83 0.046897
Target:  5'- uUGCGCgGGUUGUCGGccgucUGCGCGACGUGc -3'
miRNA:   3'- -ACGCGgUCAACGGCC-----ACGUGCUGUAC- -5'
24318 5' -56.8 NC_005263.2 + 11897 0.66 0.548899
Target:  5'- gGCGCCGGgcGCCuGcGCGCuGGCGUc -3'
miRNA:   3'- aCGCGGUCaaCGGcCaCGUG-CUGUAc -5'
24318 5' -56.8 NC_005263.2 + 13058 0.69 0.385322
Target:  5'- aUGUGCuCGGUuucacgggcgugucUGCCGGUGUcggACGGCAg- -3'
miRNA:   3'- -ACGCG-GUCA--------------ACGGCCACG---UGCUGUac -5'
24318 5' -56.8 NC_005263.2 + 13302 0.76 0.148451
Target:  5'- cGCaGCCAGUUGUCGaUGUACGGCAUc -3'
miRNA:   3'- aCG-CGGUCAACGGCcACGUGCUGUAc -5'
24318 5' -56.8 NC_005263.2 + 14079 0.69 0.370172
Target:  5'- cGCGCCGGcccaUGUCGGcugguaccggcUGCGCGGCGg- -3'
miRNA:   3'- aCGCGGUCa---ACGGCC-----------ACGUGCUGUac -5'
24318 5' -56.8 NC_005263.2 + 14169 0.73 0.229332
Target:  5'- cGgGCCGGcgGCCGGUGUGCGcgagcuGCGUGc -3'
miRNA:   3'- aCgCGGUCaaCGGCCACGUGC------UGUAC- -5'
24318 5' -56.8 NC_005263.2 + 15569 0.69 0.413037
Target:  5'- cGCGCUgaacgccgaaugacGGUagcgcgGCCGGUGCACGAg--- -3'
miRNA:   3'- aCGCGG--------------UCAa-----CGGCCACGUGCUguac -5'
24318 5' -56.8 NC_005263.2 + 18210 0.7 0.361453
Target:  5'- aUGCGCgCAGUaucacacgcUGuCCGGccGCGCGACGUa -3'
miRNA:   3'- -ACGCG-GUCA---------AC-GGCCa-CGUGCUGUAc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.