Results 1 - 20 of 55 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24318 | 5' | -56.8 | NC_005263.2 | + | 42159 | 1.09 | 0.000551 |
Target: 5'- gUGCGCCAGUUGCCGGUGCACGACAUGa -3' miRNA: 3'- -ACGCGGUCAACGGCCACGUGCUGUAC- -5' |
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24318 | 5' | -56.8 | NC_005263.2 | + | 10547 | 0.83 | 0.046897 |
Target: 5'- uUGCGCgGGUUGUCGGccgucUGCGCGACGUGc -3' miRNA: 3'- -ACGCGgUCAACGGCC-----ACGUGCUGUAC- -5' |
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24318 | 5' | -56.8 | NC_005263.2 | + | 42567 | 0.8 | 0.077113 |
Target: 5'- cGCGCCAggccGUUGCCGGc-CACGGCAUGa -3' miRNA: 3'- aCGCGGU----CAACGGCCacGUGCUGUAC- -5' |
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24318 | 5' | -56.8 | NC_005263.2 | + | 44185 | 0.76 | 0.12906 |
Target: 5'- gGCGCUAGgccUGCCGGUGCAgaaaGACAc- -3' miRNA: 3'- aCGCGGUCa--ACGGCCACGUg---CUGUac -5' |
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24318 | 5' | -56.8 | NC_005263.2 | + | 41075 | 0.76 | 0.132741 |
Target: 5'- aUGCGCCAuccGUCGGcGCGCGACAUGc -3' miRNA: 3'- -ACGCGGUcaaCGGCCaCGUGCUGUAC- -5' |
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24318 | 5' | -56.8 | NC_005263.2 | + | 13302 | 0.76 | 0.148451 |
Target: 5'- cGCaGCCAGUUGUCGaUGUACGGCAUc -3' miRNA: 3'- aCG-CGGUCAACGGCcACGUGCUGUAc -5' |
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24318 | 5' | -56.8 | NC_005263.2 | + | 22182 | 0.75 | 0.156926 |
Target: 5'- aGCGCCGGgcgaaCCGGUGCugG-CGUGg -3' miRNA: 3'- aCGCGGUCaac--GGCCACGugCuGUAC- -5' |
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24318 | 5' | -56.8 | NC_005263.2 | + | 2091 | 0.75 | 0.165837 |
Target: 5'- cGUGCCAGUUGUCGGUGUAauCGGgGUc -3' miRNA: 3'- aCGCGGUCAACGGCCACGU--GCUgUAc -5' |
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24318 | 5' | -56.8 | NC_005263.2 | + | 20882 | 0.74 | 0.200683 |
Target: 5'- cUGCGCCAGUgGCaggaGGcGCACGGgAUGa -3' miRNA: 3'- -ACGCGGUCAaCGg---CCaCGUGCUgUAC- -5' |
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24318 | 5' | -56.8 | NC_005263.2 | + | 14169 | 0.73 | 0.229332 |
Target: 5'- cGgGCCGGcgGCCGGUGUGCGcgagcuGCGUGc -3' miRNA: 3'- aCgCGGUCaaCGGCCACGUGC------UGUAC- -5' |
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24318 | 5' | -56.8 | NC_005263.2 | + | 6128 | 0.72 | 0.26136 |
Target: 5'- --gGCCGGUaUGUCGGUGCGCGAUc-- -3' miRNA: 3'- acgCGGUCA-ACGGCCACGUGCUGuac -5' |
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24318 | 5' | -56.8 | NC_005263.2 | + | 18953 | 0.71 | 0.296938 |
Target: 5'- cGCGCCGGUUcgagcgcaGCCG--GCACGACGUc -3' miRNA: 3'- aCGCGGUCAA--------CGGCcaCGUGCUGUAc -5' |
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24318 | 5' | -56.8 | NC_005263.2 | + | 37937 | 0.71 | 0.312187 |
Target: 5'- cGcCGCCGGcaGCCGGUGCGCaACcgGc -3' miRNA: 3'- aC-GCGGUCaaCGGCCACGUGcUGuaC- -5' |
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24318 | 5' | -56.8 | NC_005263.2 | + | 28191 | 0.7 | 0.320032 |
Target: 5'- gGCGCCuucugcaugccGUUGCCGGcguucacagGCACGGCGUc -3' miRNA: 3'- aCGCGGu----------CAACGGCCa--------CGUGCUGUAc -5' |
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24318 | 5' | -56.8 | NC_005263.2 | + | 28949 | 0.7 | 0.352877 |
Target: 5'- cGCGCCGGcggaUGCaCGGU-CACGACGa- -3' miRNA: 3'- aCGCGGUCa---ACG-GCCAcGUGCUGUac -5' |
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24318 | 5' | -56.8 | NC_005263.2 | + | 43583 | 0.7 | 0.361453 |
Target: 5'- aGCGCCGcacGUCGGUagagaauguGCGCGACGUGc -3' miRNA: 3'- aCGCGGUcaaCGGCCA---------CGUGCUGUAC- -5' |
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24318 | 5' | -56.8 | NC_005263.2 | + | 18210 | 0.7 | 0.361453 |
Target: 5'- aUGCGCgCAGUaucacacgcUGuCCGGccGCGCGACGUa -3' miRNA: 3'- -ACGCG-GUCA---------AC-GGCCa-CGUGCUGUAc -5' |
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24318 | 5' | -56.8 | NC_005263.2 | + | 24705 | 0.7 | 0.361453 |
Target: 5'- cGCGCCGaacgUGCCGGgcgGCGCaGGCGg- -3' miRNA: 3'- aCGCGGUca--ACGGCCa--CGUG-CUGUac -5' |
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24318 | 5' | -56.8 | NC_005263.2 | + | 14079 | 0.69 | 0.370172 |
Target: 5'- cGCGCCGGcccaUGUCGGcugguaccggcUGCGCGGCGg- -3' miRNA: 3'- aCGCGGUCa---ACGGCC-----------ACGUGCUGUac -5' |
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24318 | 5' | -56.8 | NC_005263.2 | + | 30303 | 0.69 | 0.379034 |
Target: 5'- aGCGCCGGgcgcgGCCGGcGUcuugACGACGa- -3' miRNA: 3'- aCGCGGUCaa---CGGCCaCG----UGCUGUac -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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