Results 1 - 20 of 42 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24319 | 5' | -53.9 | NC_005263.2 | + | 42312 | 1.1 | 0.000966 |
Target: 5'- uUCUACGAGAAAGCGACCGGCCGCAAGg -3' miRNA: 3'- -AGAUGCUCUUUCGCUGGCCGGCGUUC- -5' |
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24319 | 5' | -53.9 | NC_005263.2 | + | 44564 | 0.76 | 0.23136 |
Target: 5'- --gGCGAGGAcauGGaCGacGCCGGCCGCGAGa -3' miRNA: 3'- agaUGCUCUU---UC-GC--UGGCCGGCGUUC- -5' |
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24319 | 5' | -53.9 | NC_005263.2 | + | 14551 | 0.71 | 0.44073 |
Target: 5'- cCUGa-AGGAAGCGcuuaGCCGGCCGCGu- -3' miRNA: 3'- aGAUgcUCUUUCGC----UGGCCGGCGUuc -5' |
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24319 | 5' | -53.9 | NC_005263.2 | + | 16348 | 0.71 | 0.460786 |
Target: 5'- uUCgACGAGAcgAAGCG-CgCGGCCGCGu- -3' miRNA: 3'- -AGaUGCUCU--UUCGCuG-GCCGGCGUuc -5' |
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24319 | 5' | -53.9 | NC_005263.2 | + | 9379 | 0.71 | 0.460786 |
Target: 5'- gCUGCGGGAAuuucagcgcGGCGGCCaGCUGCu-- -3' miRNA: 3'- aGAUGCUCUU---------UCGCUGGcCGGCGuuc -5' |
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24319 | 5' | -53.9 | NC_005263.2 | + | 30334 | 0.71 | 0.460786 |
Target: 5'- aUUUGCGAGAAGcGCGugccgaGCgCGGCCGCGc- -3' miRNA: 3'- -AGAUGCUCUUU-CGC------UG-GCCGGCGUuc -5' |
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24319 | 5' | -53.9 | NC_005263.2 | + | 6090 | 0.71 | 0.481314 |
Target: 5'- cCUugGc----GCGGCCGGCCGCAc- -3' miRNA: 3'- aGAugCucuuuCGCUGGCCGGCGUuc -5' |
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24319 | 5' | -53.9 | NC_005263.2 | + | 14165 | 0.7 | 0.491743 |
Target: 5'- aCUuCGGGccGGCGGCCGGUgugCGCGAGc -3' miRNA: 3'- aGAuGCUCuuUCGCUGGCCG---GCGUUC- -5' |
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24319 | 5' | -53.9 | NC_005263.2 | + | 15381 | 0.7 | 0.502276 |
Target: 5'- gCUGuCGGGu-AGCGAcCCGGCCGCc-- -3' miRNA: 3'- aGAU-GCUCuuUCGCU-GGCCGGCGuuc -5' |
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24319 | 5' | -53.9 | NC_005263.2 | + | 33994 | 0.7 | 0.534433 |
Target: 5'- gCUACGAucgcGAcGGCGACCG-CCGCGc- -3' miRNA: 3'- aGAUGCU----CUuUCGCUGGCcGGCGUuc -5' |
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24319 | 5' | -53.9 | NC_005263.2 | + | 34319 | 0.69 | 0.545318 |
Target: 5'- cCUGgGGcGAAGCGAUCGGCgGCAc- -3' miRNA: 3'- aGAUgCUcUUUCGCUGGCCGgCGUuc -5' |
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24319 | 5' | -53.9 | NC_005263.2 | + | 17206 | 0.69 | 0.556272 |
Target: 5'- --gAUGGGAcAAGCuGGCCGGCaGCAAGa -3' miRNA: 3'- agaUGCUCU-UUCG-CUGGCCGgCGUUC- -5' |
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24319 | 5' | -53.9 | NC_005263.2 | + | 35733 | 0.69 | 0.578361 |
Target: 5'- --gGCGAGAcgccggaagAAGCGGCgCGG-CGCGAGa -3' miRNA: 3'- agaUGCUCU---------UUCGCUG-GCCgGCGUUC- -5' |
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24319 | 5' | -53.9 | NC_005263.2 | + | 47309 | 0.69 | 0.600633 |
Target: 5'- cCUGCGcc--GGCGGCCGGCaCGCucAAGg -3' miRNA: 3'- aGAUGCucuuUCGCUGGCCG-GCG--UUC- -5' |
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24319 | 5' | -53.9 | NC_005263.2 | + | 45235 | 0.69 | 0.605104 |
Target: 5'- gUCaGCGAGAucgucuacaacuggcGGGCgGGCCGGcCCGCAu- -3' miRNA: 3'- -AGaUGCUCU---------------UUCG-CUGGCC-GGCGUuc -5' |
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24319 | 5' | -53.9 | NC_005263.2 | + | 3802 | 0.68 | 0.611816 |
Target: 5'- aUCUGCGAGGcGAGCG-CCGGaUCGaaCAGGg -3' miRNA: 3'- -AGAUGCUCU-UUCGCuGGCC-GGC--GUUC- -5' |
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24319 | 5' | -53.9 | NC_005263.2 | + | 42011 | 0.68 | 0.611816 |
Target: 5'- -gUGCcGGcaguGCGGCCGGCCGCGc- -3' miRNA: 3'- agAUGcUCuuu-CGCUGGCCGGCGUuc -5' |
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24319 | 5' | -53.9 | NC_005263.2 | + | 30400 | 0.68 | 0.623017 |
Target: 5'- gCUuCG-GAuagcGCGACCGGCUGCAGc -3' miRNA: 3'- aGAuGCuCUuu--CGCUGGCCGGCGUUc -5' |
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24319 | 5' | -53.9 | NC_005263.2 | + | 17340 | 0.68 | 0.634227 |
Target: 5'- --cGCGAGGAAGuCGugCGuGUCGaCAAGg -3' miRNA: 3'- agaUGCUCUUUC-GCugGC-CGGC-GUUC- -5' |
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24319 | 5' | -53.9 | NC_005263.2 | + | 35548 | 0.68 | 0.645435 |
Target: 5'- --cGCGGGcgGGCGcuacggcgccGCCGGCCGCc-- -3' miRNA: 3'- agaUGCUCuuUCGC----------UGGCCGGCGuuc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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