miRNA display CGI


Results 1 - 20 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24319 5' -53.9 NC_005263.2 + 42312 1.1 0.000966
Target:  5'- uUCUACGAGAAAGCGACCGGCCGCAAGg -3'
miRNA:   3'- -AGAUGCUCUUUCGCUGGCCGGCGUUC- -5'
24319 5' -53.9 NC_005263.2 + 47444 0.66 0.754942
Target:  5'- gCUACGAuGAGGCGuucgauCUGGCCgGCAc- -3'
miRNA:   3'- aGAUGCUcUUUCGCu-----GGCCGG-CGUuc -5'
24319 5' -53.9 NC_005263.2 + 20430 0.66 0.754942
Target:  5'- --cGCGcacaAGAAGGCGGCCGugcuugccGCCGcCGAGa -3'
miRNA:   3'- agaUGC----UCUUUCGCUGGC--------CGGC-GUUC- -5'
24319 5' -53.9 NC_005263.2 + 4656 0.66 0.775669
Target:  5'- --gGCGAc-GGGCaGGCCGGCgCGCGGGu -3'
miRNA:   3'- agaUGCUcuUUCG-CUGGCCG-GCGUUC- -5'
24319 5' -53.9 NC_005263.2 + 45235 0.69 0.605104
Target:  5'- gUCaGCGAGAucgucuacaacuggcGGGCgGGCCGGcCCGCAu- -3'
miRNA:   3'- -AGaUGCUCU---------------UUCG-CUGGCC-GGCGUuc -5'
24319 5' -53.9 NC_005263.2 + 42011 0.68 0.611816
Target:  5'- -gUGCcGGcaguGCGGCCGGCCGCGc- -3'
miRNA:   3'- agAUGcUCuuu-CGCUGGCCGGCGUuc -5'
24319 5' -53.9 NC_005263.2 + 17340 0.68 0.634227
Target:  5'- --cGCGAGGAAGuCGugCGuGUCGaCAAGg -3'
miRNA:   3'- agaUGCUCUUUC-GCugGC-CGGC-GUUC- -5'
24319 5' -53.9 NC_005263.2 + 24539 0.68 0.645435
Target:  5'- -gUGCGGGuucGUGccuGCCGGCUGCGGGa -3'
miRNA:   3'- agAUGCUCuuuCGC---UGGCCGGCGUUC- -5'
24319 5' -53.9 NC_005263.2 + 3672 0.67 0.701061
Target:  5'- cUCguuCGAGAcAGUG-CCGGCCGUc-- -3'
miRNA:   3'- -AGau-GCUCUuUCGCuGGCCGGCGuuc -5'
24319 5' -53.9 NC_005263.2 + 28306 0.67 0.712025
Target:  5'- aCUGCGcGAucGCGGCgcgaaucugguCGGCCGcCGAGc -3'
miRNA:   3'- aGAUGCuCUuuCGCUG-----------GCCGGC-GUUC- -5'
24319 5' -53.9 NC_005263.2 + 16202 0.67 0.690029
Target:  5'- --gACGAGcGAGGCuuuGAUCGGuuGCAGGu -3'
miRNA:   3'- agaUGCUC-UUUCG---CUGGCCggCGUUC- -5'
24319 5' -53.9 NC_005263.2 + 44564 0.76 0.23136
Target:  5'- --gGCGAGGAcauGGaCGacGCCGGCCGCGAGa -3'
miRNA:   3'- agaUGCUCUU---UC-GC--UGGCCGGCGUUC- -5'
24319 5' -53.9 NC_005263.2 + 41860 0.66 0.722906
Target:  5'- --gACGGcacGAccGCGcCUGGCCGCGAGc -3'
miRNA:   3'- agaUGCU---CUuuCGCuGGCCGGCGUUC- -5'
24319 5' -53.9 NC_005263.2 + 30334 0.71 0.460786
Target:  5'- aUUUGCGAGAAGcGCGugccgaGCgCGGCCGCGc- -3'
miRNA:   3'- -AGAUGCUCUUU-CGC------UG-GCCGGCGUuc -5'
24319 5' -53.9 NC_005263.2 + 20006 0.67 0.678938
Target:  5'- gUCaACGAc---GCGAUCGGCCGCGc- -3'
miRNA:   3'- -AGaUGCUcuuuCGCUGGCCGGCGUuc -5'
24319 5' -53.9 NC_005263.2 + 42710 0.66 0.733695
Target:  5'- gUUGC-AGAGGGCGGCCGuuugugacuGCUGCAAa -3'
miRNA:   3'- aGAUGcUCUUUCGCUGGC---------CGGCGUUc -5'
24319 5' -53.9 NC_005263.2 + 34690 0.66 0.765376
Target:  5'- ---cCGGGAucaAGGCG-CCGGCCGUg-- -3'
miRNA:   3'- agauGCUCU---UUCGCuGGCCGGCGuuc -5'
24319 5' -53.9 NC_005263.2 + 14165 0.7 0.491743
Target:  5'- aCUuCGGGccGGCGGCCGGUgugCGCGAGc -3'
miRNA:   3'- aGAuGCUCuuUCGCUGGCCG---GCGUUC- -5'
24319 5' -53.9 NC_005263.2 + 3802 0.68 0.611816
Target:  5'- aUCUGCGAGGcGAGCG-CCGGaUCGaaCAGGg -3'
miRNA:   3'- -AGAUGCUCU-UUCGCuGGCC-GGC--GUUC- -5'
24319 5' -53.9 NC_005263.2 + 788 0.67 0.712025
Target:  5'- cCUuCGAccuuGAGCGuGCCGGCCGCcGGc -3'
miRNA:   3'- aGAuGCUcu--UUCGC-UGGCCGGCGuUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.