miRNA display CGI


Results 21 - 40 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24320 3' -55.2 NC_005263.2 + 13077 0.69 0.484439
Target:  5'- uGCGCUUGcagUGCGUCGAggccggacagcGGCGUGUUg -3'
miRNA:   3'- -CGCGGACua-GCGCAGUUa----------CCGCACGG- -5'
24320 3' -55.2 NC_005263.2 + 14216 0.7 0.463098
Target:  5'- cGUGCCgu-UCGCGcgCAacgaauccgacccGUGGCGUGCg -3'
miRNA:   3'- -CGCGGacuAGCGCa-GU-------------UACCGCACGg -5'
24320 3' -55.2 NC_005263.2 + 15655 0.66 0.679728
Target:  5'- aCGCaaccgGAUCGaCGaCugcgcuUGGCGUGCCa -3'
miRNA:   3'- cGCGga---CUAGC-GCaGuu----ACCGCACGG- -5'
24320 3' -55.2 NC_005263.2 + 16644 0.68 0.591407
Target:  5'- gGCGCC-GAacuugcaggcgcUCGCGUCGuucGGCGUGa- -3'
miRNA:   3'- -CGCGGaCU------------AGCGCAGUua-CCGCACgg -5'
24320 3' -55.2 NC_005263.2 + 16769 0.67 0.613469
Target:  5'- cGCGCCUGA-CG-GcCGccGGCGUaucGCCg -3'
miRNA:   3'- -CGCGGACUaGCgCaGUuaCCGCA---CGG- -5'
24320 3' -55.2 NC_005263.2 + 17489 0.69 0.525253
Target:  5'- cGC-CCUGAUCGCGcgcggcgcgucgaUCGAUcaGGCGgcgGCUa -3'
miRNA:   3'- -CGcGGACUAGCGC-------------AGUUA--CCGCa--CGG- -5'
24320 3' -55.2 NC_005263.2 + 18907 0.67 0.613469
Target:  5'- cGCGCCgGccUGCGUCGA--GCGUGaCCg -3'
miRNA:   3'- -CGCGGaCuaGCGCAGUUacCGCAC-GG- -5'
24320 3' -55.2 NC_005263.2 + 19033 0.68 0.591407
Target:  5'- cGCGCCU-AUCGCGcCGua-GCGgGCCg -3'
miRNA:   3'- -CGCGGAcUAGCGCaGUuacCGCaCGG- -5'
24320 3' -55.2 NC_005263.2 + 19074 0.66 0.690674
Target:  5'- -gGCCg---CGCGUCAGUacGGCGUcGCg -3'
miRNA:   3'- cgCGGacuaGCGCAGUUA--CCGCA-CGg -5'
24320 3' -55.2 NC_005263.2 + 19078 0.66 0.712383
Target:  5'- cGCGCgCUGGU-GCGUCuugcagGGCuG-GCCg -3'
miRNA:   3'- -CGCG-GACUAgCGCAGuua---CCG-CaCGG- -5'
24320 3' -55.2 NC_005263.2 + 19401 0.67 0.600219
Target:  5'- cGCGCaguacggcaacGcgCGCGUUGAgguguucGGCGUGCCg -3'
miRNA:   3'- -CGCGga---------CuaGCGCAGUUa------CCGCACGG- -5'
24320 3' -55.2 NC_005263.2 + 19625 0.67 0.64666
Target:  5'- aCGCCUcGUaCGCGUUGAUGGCugaagugauGUcGCCg -3'
miRNA:   3'- cGCGGAcUA-GCGCAGUUACCG---------CA-CGG- -5'
24320 3' -55.2 NC_005263.2 + 20291 0.66 0.668736
Target:  5'- --aCCUGuccagcuUCGCGaacgCGAUGGCG-GCCg -3'
miRNA:   3'- cgcGGACu------AGCGCa---GUUACCGCaCGG- -5'
24320 3' -55.2 NC_005263.2 + 20990 0.75 0.235605
Target:  5'- cGCGCCUG--CGCGUCGA---CGUGCCg -3'
miRNA:   3'- -CGCGGACuaGCGCAGUUaccGCACGG- -5'
24320 3' -55.2 NC_005263.2 + 23520 0.66 0.679728
Target:  5'- cCGCCUGcgCcCGaCAugauauucGGCGUGCCg -3'
miRNA:   3'- cGCGGACuaGcGCaGUua------CCGCACGG- -5'
24320 3' -55.2 NC_005263.2 + 23777 0.67 0.613469
Target:  5'- cGCGCCguuUUGCGgaauugCGAUGccCGUGCCg -3'
miRNA:   3'- -CGCGGacuAGCGCa-----GUUACc-GCACGG- -5'
24320 3' -55.2 NC_005263.2 + 24761 0.66 0.690674
Target:  5'- cGgGCCUGcuacuGUCGC-UCAcgGGCG-GCg -3'
miRNA:   3'- -CgCGGAC-----UAGCGcAGUuaCCGCaCGg -5'
24320 3' -55.2 NC_005263.2 + 24825 0.68 0.569484
Target:  5'- gGCGCCUGuccccaggGCuUCcacGGCGUGCCg -3'
miRNA:   3'- -CGCGGACuag-----CGcAGuuaCCGCACGG- -5'
24320 3' -55.2 NC_005263.2 + 25762 0.69 0.498924
Target:  5'- cCGCgUGAUCuGCGUCGAgaaGcagcccgcgcgcugaGCGUGCCg -3'
miRNA:   3'- cGCGgACUAG-CGCAGUUa--C---------------CGCACGG- -5'
24320 3' -55.2 NC_005263.2 + 25974 0.68 0.547767
Target:  5'- aGCGCCccguccggcGAUCGCG-CuugcaGCGUGCCg -3'
miRNA:   3'- -CGCGGa--------CUAGCGCaGuuac-CGCACGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.