miRNA display CGI


Results 1 - 20 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24320 3' -55.2 NC_005263.2 + 1282 0.66 0.712383
Target:  5'- cCGCCUGGcgCGCGUugcguuacgCGAUcGGCGUGa- -3'
miRNA:   3'- cGCGGACUa-GCGCA---------GUUA-CCGCACgg -5'
24320 3' -55.2 NC_005263.2 + 2409 0.7 0.454103
Target:  5'- uCGCUUGGUCGcCGUaCAGcGGCagcGUGCCu -3'
miRNA:   3'- cGCGGACUAGC-GCA-GUUaCCG---CACGG- -5'
24320 3' -55.2 NC_005263.2 + 2677 0.71 0.396708
Target:  5'- gGCaGCCUGcaguGUCGCGcCGGcGGCG-GCCg -3'
miRNA:   3'- -CG-CGGAC----UAGCGCaGUUaCCGCaCGG- -5'
24320 3' -55.2 NC_005263.2 + 3523 0.67 0.624529
Target:  5'- uGCGgCUGAUCgGCGUaaaGcgGGaucagcgcaGUGCCg -3'
miRNA:   3'- -CGCgGACUAG-CGCAg--UuaCCg--------CACGG- -5'
24320 3' -55.2 NC_005263.2 + 3914 0.71 0.415322
Target:  5'- aGCGCCgg---GCGgCAAUGGCGgcagGCCg -3'
miRNA:   3'- -CGCGGacuagCGCaGUUACCGCa---CGG- -5'
24320 3' -55.2 NC_005263.2 + 4171 0.66 0.679728
Target:  5'- cGCGCCgcgcUCGUGcugCAGcGGCGUGUg -3'
miRNA:   3'- -CGCGGacu-AGCGCa--GUUaCCGCACGg -5'
24320 3' -55.2 NC_005263.2 + 4205 0.68 0.552091
Target:  5'- uGCGCCUGAaucugcagcugCGCGUCGAcgcucgaaaacgucGGCGUcaggauGCCg -3'
miRNA:   3'- -CGCGGACUa----------GCGCAGUUa-------------CCGCA------CGG- -5'
24320 3' -55.2 NC_005263.2 + 4639 0.68 0.547767
Target:  5'- aGCGCC--AUCGCGaUC-AUGGCGacgggcagGCCg -3'
miRNA:   3'- -CGCGGacUAGCGC-AGuUACCGCa-------CGG- -5'
24320 3' -55.2 NC_005263.2 + 4947 0.68 0.591407
Target:  5'- uGCGUCUGGUUguaccaggGCG-CAAUGGCcgaGCCu -3'
miRNA:   3'- -CGCGGACUAG--------CGCaGUUACCGca-CGG- -5'
24320 3' -55.2 NC_005263.2 + 5180 0.68 0.55751
Target:  5'- uGCGCCUGAuugaacaUCGCcugCAGgcgcGGCGUcGCUa -3'
miRNA:   3'- -CGCGGACU-------AGCGca-GUUa---CCGCA-CGG- -5'
24320 3' -55.2 NC_005263.2 + 6651 0.71 0.424828
Target:  5'- aGCGCCUGcUCGa-UCAuAUGcGCGUGCUc -3'
miRNA:   3'- -CGCGGACuAGCgcAGU-UAC-CGCACGG- -5'
24320 3' -55.2 NC_005263.2 + 7036 0.73 0.303636
Target:  5'- cGCGCCgacgGAuggcgcaUCGCGcCAAUGGCagGUGCg -3'
miRNA:   3'- -CGCGGa---CU-------AGCGCaGUUACCG--CACGg -5'
24320 3' -55.2 NC_005263.2 + 8361 0.72 0.344196
Target:  5'- uUGCCgaGGUCGCuugucGUCAGUGGCGcaggcagGCCg -3'
miRNA:   3'- cGCGGa-CUAGCG-----CAGUUACCGCa------CGG- -5'
24320 3' -55.2 NC_005263.2 + 9135 0.68 0.568393
Target:  5'- uUGCC-GGUCGCGUCGugguucgucucauGcuuguUGGCcGUGCCg -3'
miRNA:   3'- cGCGGaCUAGCGCAGU-------------U-----ACCG-CACGG- -5'
24320 3' -55.2 NC_005263.2 + 9657 0.66 0.673138
Target:  5'- aGCGUCUcGAUCGcCGUCuugaccguggccGGCGUcacGCCg -3'
miRNA:   3'- -CGCGGA-CUAGC-GCAGuua---------CCGCA---CGG- -5'
24320 3' -55.2 NC_005263.2 + 10914 0.68 0.552091
Target:  5'- cGCGCUgggggaugccgcacgUGAUCGCGUCGugcggGGUGaGCg -3'
miRNA:   3'- -CGCGG---------------ACUAGCGCAGUua---CCGCaCGg -5'
24320 3' -55.2 NC_005263.2 + 11237 0.67 0.602425
Target:  5'- cGCGCCcgGGUCGaauucUCGAccgccgGGCGUGCg -3'
miRNA:   3'- -CGCGGa-CUAGCgc---AGUUa-----CCGCACGg -5'
24320 3' -55.2 NC_005263.2 + 11496 0.66 0.716689
Target:  5'- uGCGCCgucgccuuguugcacUGGUCGCGcgCGAUgaaGGCG-GCg -3'
miRNA:   3'- -CGCGG---------------ACUAGCGCa-GUUA---CCGCaCGg -5'
24320 3' -55.2 NC_005263.2 + 11904 0.66 0.701563
Target:  5'- gGCGCCUGcgCGC-----UGGCGU-CCu -3'
miRNA:   3'- -CGCGGACuaGCGcaguuACCGCAcGG- -5'
24320 3' -55.2 NC_005263.2 + 12675 0.72 0.352592
Target:  5'- cGCGCCgGGgucgucguUCGCGUCGAgcuugccGGCGUagggGCCg -3'
miRNA:   3'- -CGCGGaCU--------AGCGCAGUUa------CCGCA----CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.