miRNA display CGI


Results 1 - 20 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24320 3' -55.2 NC_005263.2 + 42874 1.14 0.000381
Target:  5'- gGCGCCUGAUCGCGUCAAUGGCGUGCCg -3'
miRNA:   3'- -CGCGGACUAGCGCAGUUACCGCACGG- -5'
24320 3' -55.2 NC_005263.2 + 38355 0.69 0.537005
Target:  5'- gGCGaCCggcGAaaugCGCcUCGAaGGCGUGCCg -3'
miRNA:   3'- -CGC-GGa--CUa---GCGcAGUUaCCGCACGG- -5'
24320 3' -55.2 NC_005263.2 + 4639 0.68 0.547767
Target:  5'- aGCGCC--AUCGCGaUC-AUGGCGacgggcagGCCg -3'
miRNA:   3'- -CGCGGacUAGCGC-AGuUACCGCa-------CGG- -5'
24320 3' -55.2 NC_005263.2 + 11496 0.66 0.716689
Target:  5'- uGCGCCgucgccuuguugcacUGGUCGCGcgCGAUgaaGGCG-GCg -3'
miRNA:   3'- -CGCGG---------------ACUAGCGCa-GUUA---CCGCaCGg -5'
24320 3' -55.2 NC_005263.2 + 12675 0.72 0.352592
Target:  5'- cGCGCCgGGgucgucguUCGCGUCGAgcuugccGGCGUagggGCCg -3'
miRNA:   3'- -CGCGGaCU--------AGCGCAGUUa------CCGCA----CGG- -5'
24320 3' -55.2 NC_005263.2 + 2677 0.71 0.396708
Target:  5'- gGCaGCCUGcaguGUCGCGcCGGcGGCG-GCCg -3'
miRNA:   3'- -CG-CGGAC----UAGCGCaGUUaCCGCaCGG- -5'
24320 3' -55.2 NC_005263.2 + 3914 0.71 0.415322
Target:  5'- aGCGCCgg---GCGgCAAUGGCGgcagGCCg -3'
miRNA:   3'- -CGCGGacuagCGCaGUUACCGCa---CGG- -5'
24320 3' -55.2 NC_005263.2 + 29723 0.7 0.444222
Target:  5'- -gGCC--GUCGCGUCGcUGGC-UGCCu -3'
miRNA:   3'- cgCGGacUAGCGCAGUuACCGcACGG- -5'
24320 3' -55.2 NC_005263.2 + 13077 0.69 0.484439
Target:  5'- uGCGCUUGcagUGCGUCGAggccggacagcGGCGUGUUg -3'
miRNA:   3'- -CGCGGACua-GCGCAGUUa----------CCGCACGG- -5'
24320 3' -55.2 NC_005263.2 + 31003 0.69 0.537005
Target:  5'- aCGCCaGAUCGUGcagCAGUgcggcgaggcgcGGCGUGCg -3'
miRNA:   3'- cGCGGaCUAGCGCa--GUUA------------CCGCACGg -5'
24320 3' -55.2 NC_005263.2 + 47773 0.69 0.494766
Target:  5'- gGCGCUUG-UCGCG-CucUGGCagugcgGUGCCg -3'
miRNA:   3'- -CGCGGACuAGCGCaGuuACCG------CACGG- -5'
24320 3' -55.2 NC_005263.2 + 30793 0.7 0.474216
Target:  5'- gGCGCCgggccGAauUCGCGcgCcGUGGCGacUGCCu -3'
miRNA:   3'- -CGCGGa----CU--AGCGCa-GuUACCGC--ACGG- -5'
24320 3' -55.2 NC_005263.2 + 20990 0.75 0.235605
Target:  5'- cGCGCCUG--CGCGUCGA---CGUGCCg -3'
miRNA:   3'- -CGCGGACuaGCGCAGUUaccGCACGG- -5'
24320 3' -55.2 NC_005263.2 + 34352 0.69 0.505192
Target:  5'- cGCGCCUGucgcCGUGUaaaccGGCaGUGCCc -3'
miRNA:   3'- -CGCGGACua--GCGCAguua-CCG-CACGG- -5'
24320 3' -55.2 NC_005263.2 + 35501 0.73 0.289494
Target:  5'- aGCGUC--GUCGCgGUCAGUGGCcccguaaguGUGCCg -3'
miRNA:   3'- -CGCGGacUAGCG-CAGUUACCG---------CACGG- -5'
24320 3' -55.2 NC_005263.2 + 2409 0.7 0.454103
Target:  5'- uCGCUUGGUCGcCGUaCAGcGGCagcGUGCCu -3'
miRNA:   3'- cGCGGACUAGC-GCA-GUUaCCG---CACGG- -5'
24320 3' -55.2 NC_005263.2 + 30322 0.69 0.537005
Target:  5'- uGCGCCUcGAaaauUUGCGagAAgcGCGUGCCg -3'
miRNA:   3'- -CGCGGA-CU----AGCGCagUUacCGCACGG- -5'
24320 3' -55.2 NC_005263.2 + 45888 0.69 0.537005
Target:  5'- aCGCCgUGAUCGCG-CAggGGCGaaaGaCCa -3'
miRNA:   3'- cGCGG-ACUAGCGCaGUuaCCGCa--C-GG- -5'
24320 3' -55.2 NC_005263.2 + 7036 0.73 0.303636
Target:  5'- cGCGCCgacgGAuggcgcaUCGCGcCAAUGGCagGUGCg -3'
miRNA:   3'- -CGCGGa---CU-------AGCGCaGUUACCG--CACGg -5'
24320 3' -55.2 NC_005263.2 + 43135 0.71 0.414379
Target:  5'- cGUGCCUGGagCGCGccggaacUCAGucgucgcgcUGGCGUGCg -3'
miRNA:   3'- -CGCGGACUa-GCGC-------AGUU---------ACCGCACGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.