Results 1 - 20 of 77 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24320 | 3' | -55.2 | NC_005263.2 | + | 42874 | 1.14 | 0.000381 |
Target: 5'- gGCGCCUGAUCGCGUCAAUGGCGUGCCg -3' miRNA: 3'- -CGCGGACUAGCGCAGUUACCGCACGG- -5' |
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24320 | 3' | -55.2 | NC_005263.2 | + | 20990 | 0.75 | 0.235605 |
Target: 5'- cGCGCCUG--CGCGUCGA---CGUGCCg -3' miRNA: 3'- -CGCGGACuaGCGCAGUUaccGCACGG- -5' |
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24320 | 3' | -55.2 | NC_005263.2 | + | 26924 | 0.73 | 0.288036 |
Target: 5'- cGCGCC-GcgCGCGUCcgcguccgccccGUGGCGUaGCCg -3' miRNA: 3'- -CGCGGaCuaGCGCAGu-----------UACCGCA-CGG- -5' |
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24320 | 3' | -55.2 | NC_005263.2 | + | 28103 | 0.73 | 0.288764 |
Target: 5'- cGCgGCC-GAUCGCGUCGuugacggcaGUGGCGccgucuugcacgcUGCCa -3' miRNA: 3'- -CG-CGGaCUAGCGCAGU---------UACCGC-------------ACGG- -5' |
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24320 | 3' | -55.2 | NC_005263.2 | + | 35501 | 0.73 | 0.289494 |
Target: 5'- aGCGUC--GUCGCgGUCAGUGGCcccguaaguGUGCCg -3' miRNA: 3'- -CGCGGacUAGCG-CAGUUACCG---------CACGG- -5' |
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24320 | 3' | -55.2 | NC_005263.2 | + | 7036 | 0.73 | 0.303636 |
Target: 5'- cGCGCCgacgGAuggcgcaUCGCGcCAAUGGCagGUGCg -3' miRNA: 3'- -CGCGGa---CU-------AGCGCaGUUACCG--CACGg -5' |
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24320 | 3' | -55.2 | NC_005263.2 | + | 36100 | 0.73 | 0.327839 |
Target: 5'- cGCGCC--GUCGCGUUGAUGGcCGcGUCg -3' miRNA: 3'- -CGCGGacUAGCGCAGUUACC-GCaCGG- -5' |
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24320 | 3' | -55.2 | NC_005263.2 | + | 8361 | 0.72 | 0.344196 |
Target: 5'- uUGCCgaGGUCGCuugucGUCAGUGGCGcaggcagGCCg -3' miRNA: 3'- cGCGGa-CUAGCG-----CAGUUACCGCa------CGG- -5' |
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24320 | 3' | -55.2 | NC_005263.2 | + | 12675 | 0.72 | 0.352592 |
Target: 5'- cGCGCCgGGgucgucguUCGCGUCGAgcuugccGGCGUagggGCCg -3' miRNA: 3'- -CGCGGaCU--------AGCGCAGUUa------CCGCA----CGG- -5' |
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24320 | 3' | -55.2 | NC_005263.2 | + | 35980 | 0.72 | 0.361132 |
Target: 5'- cCGCCUGGagCGCGcgUAAUGGCGcgcgcGCCg -3' miRNA: 3'- cGCGGACUa-GCGCa-GUUACCGCa----CGG- -5' |
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24320 | 3' | -55.2 | NC_005263.2 | + | 2677 | 0.71 | 0.396708 |
Target: 5'- gGCaGCCUGcaguGUCGCGcCGGcGGCG-GCCg -3' miRNA: 3'- -CG-CGGAC----UAGCGCaGUUaCCGCaCGG- -5' |
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24320 | 3' | -55.2 | NC_005263.2 | + | 43135 | 0.71 | 0.414379 |
Target: 5'- cGUGCCUGGagCGCGccggaacUCAGucgucgcgcUGGCGUGCg -3' miRNA: 3'- -CGCGGACUa-GCGC-------AGUU---------ACCGCACGg -5' |
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24320 | 3' | -55.2 | NC_005263.2 | + | 3914 | 0.71 | 0.415322 |
Target: 5'- aGCGCCgg---GCGgCAAUGGCGgcagGCCg -3' miRNA: 3'- -CGCGGacuagCGCaGUUACCGCa---CGG- -5' |
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24320 | 3' | -55.2 | NC_005263.2 | + | 6651 | 0.71 | 0.424828 |
Target: 5'- aGCGCCUGcUCGa-UCAuAUGcGCGUGCUc -3' miRNA: 3'- -CGCGGACuAGCgcAGU-UAC-CGCACGG- -5' |
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24320 | 3' | -55.2 | NC_005263.2 | + | 29723 | 0.7 | 0.444222 |
Target: 5'- -gGCC--GUCGCGUCGcUGGC-UGCCu -3' miRNA: 3'- cgCGGacUAGCGCAGUuACCGcACGG- -5' |
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24320 | 3' | -55.2 | NC_005263.2 | + | 2409 | 0.7 | 0.454103 |
Target: 5'- uCGCUUGGUCGcCGUaCAGcGGCagcGUGCCu -3' miRNA: 3'- cGCGGACUAGC-GCA-GUUaCCG---CACGG- -5' |
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24320 | 3' | -55.2 | NC_005263.2 | + | 14216 | 0.7 | 0.463098 |
Target: 5'- cGUGCCgu-UCGCGcgCAacgaauccgacccGUGGCGUGCg -3' miRNA: 3'- -CGCGGacuAGCGCa-GU-------------UACCGCACGg -5' |
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24320 | 3' | -55.2 | NC_005263.2 | + | 30793 | 0.7 | 0.474216 |
Target: 5'- gGCGCCgggccGAauUCGCGcgCcGUGGCGacUGCCu -3' miRNA: 3'- -CGCGGa----CU--AGCGCa-GuUACCGC--ACGG- -5' |
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24320 | 3' | -55.2 | NC_005263.2 | + | 31482 | 0.69 | 0.484439 |
Target: 5'- gGCGCCUGGcC-CGUCAGcGGCGcgagcUGCUg -3' miRNA: 3'- -CGCGGACUaGcGCAGUUaCCGC-----ACGG- -5' |
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24320 | 3' | -55.2 | NC_005263.2 | + | 13077 | 0.69 | 0.484439 |
Target: 5'- uGCGCUUGcagUGCGUCGAggccggacagcGGCGUGUUg -3' miRNA: 3'- -CGCGGACua-GCGCAGUUa----------CCGCACGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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