Results 21 - 40 of 77 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24320 | 3' | -55.2 | NC_005263.2 | + | 44655 | 0.68 | 0.555341 |
Target: 5'- uGCGCCUcGAU-GCGUCGcgcgcgccgaagaaGUcGGCG-GCCa -3' miRNA: 3'- -CGCGGA-CUAgCGCAGU--------------UA-CCGCaCGG- -5' |
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24320 | 3' | -55.2 | NC_005263.2 | + | 4205 | 0.68 | 0.552091 |
Target: 5'- uGCGCCUGAaucugcagcugCGCGUCGAcgcucgaaaacgucGGCGUcaggauGCCg -3' miRNA: 3'- -CGCGGACUa----------GCGCAGUUa-------------CCGCA------CGG- -5' |
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24320 | 3' | -55.2 | NC_005263.2 | + | 31003 | 0.69 | 0.537005 |
Target: 5'- aCGCCaGAUCGUGcagCAGUgcggcgaggcgcGGCGUGCg -3' miRNA: 3'- cGCGGaCUAGCGCa--GUUA------------CCGCACGg -5' |
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24320 | 3' | -55.2 | NC_005263.2 | + | 47773 | 0.69 | 0.494766 |
Target: 5'- gGCGCUUG-UCGCG-CucUGGCagugcgGUGCCg -3' miRNA: 3'- -CGCGGACuAGCGCaGuuACCG------CACGG- -5' |
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24320 | 3' | -55.2 | NC_005263.2 | + | 29356 | 0.66 | 0.668736 |
Target: 5'- cGCGCCgccuacGAUCGCGcCGAucUGGCGcuUGaCUc -3' miRNA: 3'- -CGCGGa-----CUAGCGCaGUU--ACCGC--AC-GG- -5' |
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24320 | 3' | -55.2 | NC_005263.2 | + | 38408 | 0.68 | 0.591407 |
Target: 5'- aCGCaCUGucgCGCGUCGGgugcgccGGCGUgacGCCg -3' miRNA: 3'- cGCG-GACua-GCGCAGUUa------CCGCA---CGG- -5' |
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24320 | 3' | -55.2 | NC_005263.2 | + | 4639 | 0.68 | 0.547767 |
Target: 5'- aGCGCC--AUCGCGaUC-AUGGCGacgggcagGCCg -3' miRNA: 3'- -CGCGGacUAGCGC-AGuUACCGCa-------CGG- -5' |
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24320 | 3' | -55.2 | NC_005263.2 | + | 31482 | 0.69 | 0.484439 |
Target: 5'- gGCGCCUGGcC-CGUCAGcGGCGcgagcUGCUg -3' miRNA: 3'- -CGCGGACUaGcGCAGUUaCCGC-----ACGG- -5' |
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24320 | 3' | -55.2 | NC_005263.2 | + | 19033 | 0.68 | 0.591407 |
Target: 5'- cGCGCCU-AUCGCGcCGua-GCGgGCCg -3' miRNA: 3'- -CGCGGAcUAGCGCaGUuacCGCaCGG- -5' |
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24320 | 3' | -55.2 | NC_005263.2 | + | 13077 | 0.69 | 0.484439 |
Target: 5'- uGCGCUUGcagUGCGUCGAggccggacagcGGCGUGUUg -3' miRNA: 3'- -CGCGGACua-GCGCAGUUa----------CCGCACGG- -5' |
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24320 | 3' | -55.2 | NC_005263.2 | + | 25974 | 0.68 | 0.547767 |
Target: 5'- aGCGCCccguccggcGAUCGCG-CuugcaGCGUGCCg -3' miRNA: 3'- -CGCGGa--------CUAGCGCaGuuac-CGCACGG- -5' |
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24320 | 3' | -55.2 | NC_005263.2 | + | 5180 | 0.68 | 0.55751 |
Target: 5'- uGCGCCUGAuugaacaUCGCcugCAGgcgcGGCGUcGCUa -3' miRNA: 3'- -CGCGGACU-------AGCGca-GUUa---CCGCA-CGG- -5' |
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24320 | 3' | -55.2 | NC_005263.2 | + | 45888 | 0.69 | 0.537005 |
Target: 5'- aCGCCgUGAUCGCG-CAggGGCGaaaGaCCa -3' miRNA: 3'- cGCGG-ACUAGCGCaGUuaCCGCa--C-GG- -5' |
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24320 | 3' | -55.2 | NC_005263.2 | + | 38355 | 0.69 | 0.537005 |
Target: 5'- gGCGaCCggcGAaaugCGCcUCGAaGGCGUGCCg -3' miRNA: 3'- -CGC-GGa--CUa---GCGcAGUUaCCGCACGG- -5' |
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24320 | 3' | -55.2 | NC_005263.2 | + | 30322 | 0.69 | 0.537005 |
Target: 5'- uGCGCCUcGAaaauUUGCGagAAgcGCGUGCCg -3' miRNA: 3'- -CGCGGA-CU----AGCGCagUUacCGCACGG- -5' |
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24320 | 3' | -55.2 | NC_005263.2 | + | 34352 | 0.69 | 0.505192 |
Target: 5'- cGCGCCUGucgcCGUGUaaaccGGCaGUGCCc -3' miRNA: 3'- -CGCGGACua--GCGCAguua-CCG-CACGG- -5' |
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24320 | 3' | -55.2 | NC_005263.2 | + | 15655 | 0.66 | 0.679728 |
Target: 5'- aCGCaaccgGAUCGaCGaCugcgcuUGGCGUGCCa -3' miRNA: 3'- cGCGga---CUAGC-GCaGuu----ACCGCACGG- -5' |
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24320 | 3' | -55.2 | NC_005263.2 | + | 20291 | 0.66 | 0.668736 |
Target: 5'- --aCCUGuccagcuUCGCGaacgCGAUGGCG-GCCg -3' miRNA: 3'- cgcGGACu------AGCGCa---GUUACCGCaCGG- -5' |
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24320 | 3' | -55.2 | NC_005263.2 | + | 42126 | 0.67 | 0.624529 |
Target: 5'- aGCGUCgUGcugCGCGaCGA-GGCGUGUCg -3' miRNA: 3'- -CGCGG-ACua-GCGCaGUUaCCGCACGG- -5' |
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24320 | 3' | -55.2 | NC_005263.2 | + | 11237 | 0.67 | 0.602425 |
Target: 5'- cGCGCCcgGGUCGaauucUCGAccgccgGGCGUGCg -3' miRNA: 3'- -CGCGGa-CUAGCgc---AGUUa-----CCGCACGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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