miRNA display CGI


Results 21 - 40 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24322 3' -62.6 NC_005263.2 + 17386 0.71 0.136202
Target:  5'- aGCUGUcugccggcgcggCCGCGCGCcuGGCGGGCGg-- -3'
miRNA:   3'- gCGACG------------GGCGCGCGc-UCGUCCGCaug -5'
24322 3' -62.6 NC_005263.2 + 17526 0.72 0.112669
Target:  5'- gCGCUGUacaGCGCGCGcAGC-GGCGUGa -3'
miRNA:   3'- -GCGACGgg-CGCGCGC-UCGuCCGCAUg -5'
24322 3' -62.6 NC_005263.2 + 18144 0.71 0.132582
Target:  5'- gCGCUGCCCGC-CGCuGcGCAGGCc--- -3'
miRNA:   3'- -GCGACGGGCGcGCG-CuCGUCCGcaug -5'
24322 3' -62.6 NC_005263.2 + 19068 0.66 0.30197
Target:  5'- gCGCgGCCUGCGCGCGcuGGU--GCGUcuuGCa -3'
miRNA:   3'- -GCGaCGGGCGCGCGC--UCGucCGCA---UG- -5'
24322 3' -62.6 NC_005263.2 + 19678 0.74 0.087984
Target:  5'- gCGCUGCCCGCgacguucacGCGCGuGCcGGCGc-- -3'
miRNA:   3'- -GCGACGGGCG---------CGCGCuCGuCCGCaug -5'
24322 3' -62.6 NC_005263.2 + 19849 0.69 0.207666
Target:  5'- uCGCUGCa---GCGCGuGCAGGUGcGCg -3'
miRNA:   3'- -GCGACGggcgCGCGCuCGUCCGCaUG- -5'
24322 3' -62.6 NC_005263.2 + 19963 0.67 0.254348
Target:  5'- uCGCgUGCUCG-GCGCuGGCAG-CGUGCa -3'
miRNA:   3'- -GCG-ACGGGCgCGCGcUCGUCcGCAUG- -5'
24322 3' -62.6 NC_005263.2 + 20092 0.68 0.21307
Target:  5'- cCGCUuauCCUGUcccugcugaagGCGCGGaugcGCAGGCGUACg -3'
miRNA:   3'- -GCGAc--GGGCG-----------CGCGCU----CGUCCGCAUG- -5'
24322 3' -62.6 NC_005263.2 + 20989 0.67 0.273961
Target:  5'- gCGC-GCCUGCGCGuCGAcguGCcGGCGUu- -3'
miRNA:   3'- -GCGaCGGGCGCGC-GCU---CGuCCGCAug -5'
24322 3' -62.6 NC_005263.2 + 21108 0.66 0.30197
Target:  5'- gGCgacgaGCCCG-GCGC-AGCGGGUGcUGCu -3'
miRNA:   3'- gCGa----CGGGCgCGCGcUCGUCCGC-AUG- -5'
24322 3' -62.6 NC_005263.2 + 21188 0.69 0.207666
Target:  5'- aCGCgga-CGCGCGCGGcGCGGGCGa-- -3'
miRNA:   3'- -GCGacggGCGCGCGCU-CGUCCGCaug -5'
24322 3' -62.6 NC_005263.2 + 22343 0.68 0.226533
Target:  5'- gGCUGCUucucgacgcagaucaCGCGgGCGGaCAGGuCGUGCa -3'
miRNA:   3'- gCGACGG---------------GCGCgCGCUcGUCC-GCAUG- -5'
24322 3' -62.6 NC_005263.2 + 22827 0.73 0.09045
Target:  5'- aCGCUGUCgCGCGCGCGGaucggcauGCAGcugaucggugcuGCGUACa -3'
miRNA:   3'- -GCGACGG-GCGCGCGCU--------CGUC------------CGCAUG- -5'
24322 3' -62.6 NC_005263.2 + 23340 0.68 0.241924
Target:  5'- aCGCcGCCCGUGaGCGAcaguaGCAGGCccgACa -3'
miRNA:   3'- -GCGaCGGGCGCgCGCU-----CGUCCGca-UG- -5'
24322 3' -62.6 NC_005263.2 + 24302 0.69 0.197214
Target:  5'- aGCgauugGCUCGCGCGCGucGCAucGGCGg-- -3'
miRNA:   3'- gCGa----CGGGCGCGCGCu-CGU--CCGCaug -5'
24322 3' -62.6 NC_005263.2 + 24848 0.68 0.241924
Target:  5'- gCGgUGCCgGUGCGCcAGCcGGCGgcUACg -3'
miRNA:   3'- -GCgACGGgCGCGCGcUCGuCCGC--AUG- -5'
24322 3' -62.6 NC_005263.2 + 25782 0.72 0.118975
Target:  5'- aGCaGCCCGCGCGCuGAGCGugccGGCa--- -3'
miRNA:   3'- gCGaCGGGCGCGCG-CUCGU----CCGcaug -5'
24322 3' -62.6 NC_005263.2 + 26919 0.67 0.273961
Target:  5'- uCGCccGCgCCGCGCGCGuccGCGuccgccccguGGCGUAg -3'
miRNA:   3'- -GCGa-CG-GGCGCGCGCu--CGU----------CCGCAUg -5'
24322 3' -62.6 NC_005263.2 + 27362 0.66 0.309309
Target:  5'- aGCcGUCUGC-CGaCGAGUAGGCGcGCu -3'
miRNA:   3'- gCGaCGGGCGcGC-GCUCGUCCGCaUG- -5'
24322 3' -62.6 NC_005263.2 + 27978 0.69 0.177681
Target:  5'- aGCUG-CUGCGCGCGAGCGuacGCcUGCg -3'
miRNA:   3'- gCGACgGGCGCGCGCUCGUc--CGcAUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.