miRNA display CGI


Results 1 - 20 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24322 3' -62.6 NC_005263.2 + 191 0.69 0.192162
Target:  5'- cCGCUGCCCGUGCGCccGGCcgcuuGGUugGCa -3'
miRNA:   3'- -GCGACGGGCGCGCGc-UCGu----CCGcaUG- -5'
24322 3' -62.6 NC_005263.2 + 1279 0.66 0.316782
Target:  5'- gCGCcGCCUgGCGCGCGuuGCGuuacgcgaucGGCGUGa -3'
miRNA:   3'- -GCGaCGGG-CGCGCGCu-CGU----------CCGCAUg -5'
24322 3' -62.6 NC_005263.2 + 2262 0.66 0.30197
Target:  5'- aGUUGUUCGagcgcaGCGCGuucgccgucGGCAGGuCGUGCg -3'
miRNA:   3'- gCGACGGGCg-----CGCGC---------UCGUCC-GCAUG- -5'
24322 3' -62.6 NC_005263.2 + 2649 0.69 0.182397
Target:  5'- aCGUUcGCgCCGgGCuCGAgguGCAGGCGUGCg -3'
miRNA:   3'- -GCGA-CG-GGCgCGcGCU---CGUCCGCAUG- -5'
24322 3' -62.6 NC_005263.2 + 3753 0.77 0.04752
Target:  5'- aCGcCUGCUCGCGCGCGGGCAG-CG-GCa -3'
miRNA:   3'- -GC-GACGGGCGCGCGCUCGUCcGCaUG- -5'
24322 3' -62.6 NC_005263.2 + 4474 0.71 0.132582
Target:  5'- ---cGUCCguGCGCGCGGGUcGGCGUGCu -3'
miRNA:   3'- gcgaCGGG--CGCGCGCUCGuCCGCAUG- -5'
24322 3' -62.6 NC_005263.2 + 4663 0.68 0.218594
Target:  5'- gGCagGCCgGCGCGCGGGUcuuucgucAGGauCGUGCc -3'
miRNA:   3'- gCGa-CGGgCGCGCGCUCG--------UCC--GCAUG- -5'
24322 3' -62.6 NC_005263.2 + 5912 0.69 0.177681
Target:  5'- aGC-GCCCG-GCGCG-GCGuGCGUACg -3'
miRNA:   3'- gCGaCGGGCgCGCGCuCGUcCGCAUG- -5'
24322 3' -62.6 NC_005263.2 + 6631 0.67 0.273961
Target:  5'- cCGaCUcGCCCGCGU-CGAGCAGcGCcUGCu -3'
miRNA:   3'- -GC-GA-CGGGCGCGcGCUCGUC-CGcAUG- -5'
24322 3' -62.6 NC_005263.2 + 8877 0.67 0.248072
Target:  5'- aCGCgGCCCGUGCuGcCGGuGCAGcGCGcGCa -3'
miRNA:   3'- -GCGaCGGGCGCG-C-GCU-CGUC-CGCaUG- -5'
24322 3' -62.6 NC_005263.2 + 10382 0.68 0.241924
Target:  5'- aGCcGCCaCGCGCcgggccggccgGCGAGCGGGUccgGCg -3'
miRNA:   3'- gCGaCGG-GCGCG-----------CGCUCGUCCGca-UG- -5'
24322 3' -62.6 NC_005263.2 + 10882 0.68 0.218594
Target:  5'- gGCaccgGCgCGCGuCGUGAGC-GGCGUAUc -3'
miRNA:   3'- gCGa---CGgGCGC-GCGCUCGuCCGCAUG- -5'
24322 3' -62.6 NC_005263.2 + 11391 0.68 0.21307
Target:  5'- uCGCgGCCUGCGCGCacguGGUucGGGCGcgGCu -3'
miRNA:   3'- -GCGaCGGGCGCGCGc---UCG--UCCGCa-UG- -5'
24322 3' -62.6 NC_005263.2 + 12509 0.67 0.248072
Target:  5'- gCGC-GCCgGCuucGCGCGGGUuGGCGUucGCa -3'
miRNA:   3'- -GCGaCGGgCG---CGCGCUCGuCCGCA--UG- -5'
24322 3' -62.6 NC_005263.2 + 12571 0.69 0.177681
Target:  5'- gCGCccGCCCGCGCGCcgccGGGCGcagucGGCGcGCc -3'
miRNA:   3'- -GCGa-CGGGCGCGCG----CUCGU-----CCGCaUG- -5'
24322 3' -62.6 NC_005263.2 + 13663 0.7 0.159886
Target:  5'- uGC-GCaCCGCGuCGCGAaugcGCAGGCGUuCg -3'
miRNA:   3'- gCGaCG-GGCGC-GCGCU----CGUCCGCAuG- -5'
24322 3' -62.6 NC_005263.2 + 14175 0.72 0.115782
Target:  5'- gGCgGCCggUGUGCGCGAGCu-GCGUGCg -3'
miRNA:   3'- gCGaCGG--GCGCGCGCUCGucCGCAUG- -5'
24322 3' -62.6 NC_005263.2 + 15358 0.73 0.103794
Target:  5'- uCGCauUGCgCCGCGCaaGCG-GCAGcGCGUACg -3'
miRNA:   3'- -GCG--ACG-GGCGCG--CGCuCGUC-CGCAUG- -5'
24322 3' -62.6 NC_005263.2 + 15849 0.69 0.202382
Target:  5'- uCGCgugGCUCGC-CGCGAuucagcagauGCAGGCGaACa -3'
miRNA:   3'- -GCGa--CGGGCGcGCGCU----------CGUCCGCaUG- -5'
24322 3' -62.6 NC_005263.2 + 16598 0.74 0.087984
Target:  5'- uCGCcggGCUCGCGCGCGAGCAGcaGCucGCg -3'
miRNA:   3'- -GCGa--CGGGCGCGCGCUCGUC--CGcaUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.