miRNA display CGI


Results 1 - 20 of 70 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24322 3' -62.6 NC_005263.2 + 44354 1.08 0.000166
Target:  5'- cCGCUGCCCGCGCGCGAGCAGGCGUACu -3'
miRNA:   3'- -GCGACGGGCGCGCGCUCGUCCGCAUG- -5'
24322 3' -62.6 NC_005263.2 + 20092 0.68 0.21307
Target:  5'- cCGCUuauCCUGUcccugcugaagGCGCGGaugcGCAGGCGUACg -3'
miRNA:   3'- -GCGAc--GGGCG-----------CGCGCU----CGUCCGCAUG- -5'
24322 3' -62.6 NC_005263.2 + 22343 0.68 0.226533
Target:  5'- gGCUGCUucucgacgcagaucaCGCGgGCGGaCAGGuCGUGCa -3'
miRNA:   3'- gCGACGG---------------GCGCgCGCUcGUCC-GCAUG- -5'
24322 3' -62.6 NC_005263.2 + 39297 0.66 0.316782
Target:  5'- aGCgGCCggcaggcgcaugCGCGCGCGAucGCAGGUugGCu -3'
miRNA:   3'- gCGaCGG------------GCGCGCGCU--CGUCCGcaUG- -5'
24322 3' -62.6 NC_005263.2 + 17526 0.72 0.112669
Target:  5'- gCGCUGUacaGCGCGCGcAGC-GGCGUGa -3'
miRNA:   3'- -GCGACGgg-CGCGCGC-UCGuCCGCAUg -5'
24322 3' -62.6 NC_005263.2 + 14175 0.72 0.115782
Target:  5'- gGCgGCCggUGUGCGCGAGCu-GCGUGCg -3'
miRNA:   3'- gCGaCGG--GCGCGCGCUCGucCGCAUG- -5'
24322 3' -62.6 NC_005263.2 + 18144 0.71 0.132582
Target:  5'- gCGCUGCCCGC-CGCuGcGCAGGCc--- -3'
miRNA:   3'- -GCGACGGGCGcGCG-CuCGUCCGcaug -5'
24322 3' -62.6 NC_005263.2 + 13663 0.7 0.159886
Target:  5'- uGC-GCaCCGCGuCGCGAaugcGCAGGCGUuCg -3'
miRNA:   3'- gCGaCG-GGCGC-GCGCU----CGUCCGCAuG- -5'
24322 3' -62.6 NC_005263.2 + 41351 0.69 0.187223
Target:  5'- aGCUcGCCCgGCGCGCGAuggacgugacgcGCgAGuGUGUACg -3'
miRNA:   3'- gCGA-CGGG-CGCGCGCU------------CG-UC-CGCAUG- -5'
24322 3' -62.6 NC_005263.2 + 11391 0.68 0.21307
Target:  5'- uCGCgGCCUGCGCGCacguGGUucGGGCGcgGCu -3'
miRNA:   3'- -GCGaCGGGCGCGCGc---UCG--UCCGCa-UG- -5'
24322 3' -62.6 NC_005263.2 + 24302 0.69 0.197214
Target:  5'- aGCgauugGCUCGCGCGCGucGCAucGGCGg-- -3'
miRNA:   3'- gCGa----CGGGCGCGCGCu-CGU--CCGCaug -5'
24322 3' -62.6 NC_005263.2 + 12571 0.69 0.177681
Target:  5'- gCGCccGCCCGCGCGCcgccGGGCGcagucGGCGcGCc -3'
miRNA:   3'- -GCGa-CGGGCGCGCG----CUCGU-----CCGCaUG- -5'
24322 3' -62.6 NC_005263.2 + 31509 0.85 0.011046
Target:  5'- uGCUGCUCGCGCGCGAGCccGGCGaACg -3'
miRNA:   3'- gCGACGGGCGCGCGCUCGu-CCGCaUG- -5'
24322 3' -62.6 NC_005263.2 + 44761 0.69 0.207666
Target:  5'- uCGCUcGaCCGCGCGCGGcGCcGGCG-GCg -3'
miRNA:   3'- -GCGA-CgGGCGCGCGCU-CGuCCGCaUG- -5'
24322 3' -62.6 NC_005263.2 + 19678 0.74 0.087984
Target:  5'- gCGCUGCCCGCgacguucacGCGCGuGCcGGCGc-- -3'
miRNA:   3'- -GCGACGGGCG---------CGCGCuCGuCCGCaug -5'
24322 3' -62.6 NC_005263.2 + 5912 0.69 0.177681
Target:  5'- aGC-GCCCG-GCGCG-GCGuGCGUACg -3'
miRNA:   3'- gCGaCGGGCgCGCGCuCGUcCGCAUG- -5'
24322 3' -62.6 NC_005263.2 + 21188 0.69 0.207666
Target:  5'- aCGCgga-CGCGCGCGGcGCGGGCGa-- -3'
miRNA:   3'- -GCGacggGCGCGCGCU-CGUCCGCaug -5'
24322 3' -62.6 NC_005263.2 + 4663 0.68 0.218594
Target:  5'- gGCagGCCgGCGCGCGGGUcuuucgucAGGauCGUGCc -3'
miRNA:   3'- gCGa-CGGgCGCGCGCUCG--------UCC--GCAUG- -5'
24322 3' -62.6 NC_005263.2 + 15358 0.73 0.103794
Target:  5'- uCGCauUGCgCCGCGCaaGCG-GCAGcGCGUACg -3'
miRNA:   3'- -GCG--ACG-GGCGCG--CGCuCGUC-CGCAUG- -5'
24322 3' -62.6 NC_005263.2 + 47263 0.72 0.115782
Target:  5'- aCGCUGUCCGCGCuCG-GUAGuGaCGUGCg -3'
miRNA:   3'- -GCGACGGGCGCGcGCuCGUC-C-GCAUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.