miRNA display CGI


Results 1 - 20 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24322 3' -62.6 NC_005263.2 + 44354 1.08 0.000166
Target:  5'- cCGCUGCCCGCGCGCGAGCAGGCGUACu -3'
miRNA:   3'- -GCGACGGGCGCGCGCUCGUCCGCAUG- -5'
24322 3' -62.6 NC_005263.2 + 31509 0.85 0.011046
Target:  5'- uGCUGCUCGCGCGCGAGCccGGCGaACg -3'
miRNA:   3'- gCGACGGGCGCGCGCUCGu-CCGCaUG- -5'
24322 3' -62.6 NC_005263.2 + 35534 0.8 0.026146
Target:  5'- uGC-GCCCggcgGCGCGCGGGCGGGCGcUACg -3'
miRNA:   3'- gCGaCGGG----CGCGCGCUCGUCCGC-AUG- -5'
24322 3' -62.6 NC_005263.2 + 3753 0.77 0.04752
Target:  5'- aCGcCUGCUCGCGCGCGGGCAG-CG-GCa -3'
miRNA:   3'- -GC-GACGGGCGCGCGCUCGUCcGCaUG- -5'
24322 3' -62.6 NC_005263.2 + 44881 0.76 0.062978
Target:  5'- uGCUGCCCG-GCGUcaucgGGGCGGGCGgcgGCc -3'
miRNA:   3'- gCGACGGGCgCGCG-----CUCGUCCGCa--UG- -5'
24322 3' -62.6 NC_005263.2 + 19678 0.74 0.087984
Target:  5'- gCGCUGCCCGCgacguucacGCGCGuGCcGGCGc-- -3'
miRNA:   3'- -GCGACGGGCG---------CGCGCuCGuCCGCaug -5'
24322 3' -62.6 NC_005263.2 + 16598 0.74 0.087984
Target:  5'- uCGCcggGCUCGCGCGCGAGCAGcaGCucGCg -3'
miRNA:   3'- -GCGa--CGGGCGCGCGCUCGUC--CGcaUG- -5'
24322 3' -62.6 NC_005263.2 + 22827 0.73 0.09045
Target:  5'- aCGCUGUCgCGCGCGCGGaucggcauGCAGcugaucggugcuGCGUACa -3'
miRNA:   3'- -GCGACGG-GCGCGCGCU--------CGUC------------CGCAUG- -5'
24322 3' -62.6 NC_005263.2 + 15358 0.73 0.103794
Target:  5'- uCGCauUGCgCCGCGCaaGCG-GCAGcGCGUACg -3'
miRNA:   3'- -GCG--ACG-GGCGCG--CGCuCGUC-CGCAUG- -5'
24322 3' -62.6 NC_005263.2 + 28144 0.73 0.106677
Target:  5'- aCGCUGCCaGCGC-CGAGCAcGCGaGCa -3'
miRNA:   3'- -GCGACGGgCGCGcGCUCGUcCGCaUG- -5'
24322 3' -62.6 NC_005263.2 + 17526 0.72 0.112669
Target:  5'- gCGCUGUacaGCGCGCGcAGC-GGCGUGa -3'
miRNA:   3'- -GCGACGgg-CGCGCGC-UCGuCCGCAUg -5'
24322 3' -62.6 NC_005263.2 + 14175 0.72 0.115782
Target:  5'- gGCgGCCggUGUGCGCGAGCu-GCGUGCg -3'
miRNA:   3'- gCGaCGG--GCGCGCGCUCGucCGCAUG- -5'
24322 3' -62.6 NC_005263.2 + 47263 0.72 0.115782
Target:  5'- aCGCUGUCCGCGCuCG-GUAGuGaCGUGCg -3'
miRNA:   3'- -GCGACGGGCGCGcGCuCGUC-C-GCAUG- -5'
24322 3' -62.6 NC_005263.2 + 25782 0.72 0.118975
Target:  5'- aGCaGCCCGCGCGCuGAGCGugccGGCa--- -3'
miRNA:   3'- gCGaCGGGCGCGCG-CUCGU----CCGcaug -5'
24322 3' -62.6 NC_005263.2 + 18144 0.71 0.132582
Target:  5'- gCGCUGCCCGC-CGCuGcGCAGGCc--- -3'
miRNA:   3'- -GCGACGGGCGcGCG-CuCGUCCGcaug -5'
24322 3' -62.6 NC_005263.2 + 4474 0.71 0.132582
Target:  5'- ---cGUCCguGCGCGCGGGUcGGCGUGCu -3'
miRNA:   3'- gcgaCGGG--CGCGCGCUCGuCCGCAUG- -5'
24322 3' -62.6 NC_005263.2 + 17386 0.71 0.136202
Target:  5'- aGCUGUcugccggcgcggCCGCGCGCcuGGCGGGCGg-- -3'
miRNA:   3'- gCGACG------------GGCGCGCGc-UCGUCCGCaug -5'
24322 3' -62.6 NC_005263.2 + 13663 0.7 0.159886
Target:  5'- uGC-GCaCCGCGuCGCGAaugcGCAGGCGUuCg -3'
miRNA:   3'- gCGaCG-GGCGC-GCGCU----CGUCCGCAuG- -5'
24322 3' -62.6 NC_005263.2 + 27978 0.69 0.177681
Target:  5'- aGCUG-CUGCGCGCGAGCGuacGCcUGCg -3'
miRNA:   3'- gCGACgGGCGCGCGCUCGUc--CGcAUG- -5'
24322 3' -62.6 NC_005263.2 + 5912 0.69 0.177681
Target:  5'- aGC-GCCCG-GCGCG-GCGuGCGUACg -3'
miRNA:   3'- gCGaCGGGCgCGCGCuCGUcCGCAUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.