miRNA display CGI


Results 21 - 40 of 100 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24322 5' -54.4 NC_005263.2 + 9792 0.68 0.623526
Target:  5'- -aACGgggGCGccUCGcCGCGUGCGGCAu -3'
miRNA:   3'- ccUGUa--CGCauAGUuGCGCGCGCCGU- -5'
24322 5' -54.4 NC_005263.2 + 9822 0.71 0.432089
Target:  5'- aGGGCGUGCaucacGUUGACGaacgGCGCGGCGc -3'
miRNA:   3'- -CCUGUACGca---UAGUUGCg---CGCGCCGU- -5'
24322 5' -54.4 NC_005263.2 + 9894 0.67 0.679204
Target:  5'- --uCAUGCucGUCGucgGCGCGCGGCGu -3'
miRNA:   3'- ccuGUACGcaUAGUug-CGCGCGCCGU- -5'
24322 5' -54.4 NC_005263.2 + 10308 0.66 0.705605
Target:  5'- uGGCcUGCGUgacgaaacgacgcucGUCGaucucGCGCagGCGCGGCAg -3'
miRNA:   3'- cCUGuACGCA---------------UAGU-----UGCG--CGCGCCGU- -5'
24322 5' -54.4 NC_005263.2 + 10757 0.71 0.422404
Target:  5'- -cGCAUGCGgccGUCGGCaucaaagcuGCGCGCGGUc -3'
miRNA:   3'- ccUGUACGCa--UAGUUG---------CGCGCGCCGu -5'
24322 5' -54.4 NC_005263.2 + 10818 0.68 0.579054
Target:  5'- cGGGCAUGUGUcagggacgcAUCAguaucACGUuaCGCGGCAu -3'
miRNA:   3'- -CCUGUACGCA---------UAGU-----UGCGc-GCGCCGU- -5'
24322 5' -54.4 NC_005263.2 + 11263 0.66 0.708878
Target:  5'- cGGGCGUGCGacccauucccggaaUgAUCGuGCGCGacgagcaGCGGCAa -3'
miRNA:   3'- -CCUGUACGC--------------A-UAGU-UGCGCg------CGCCGU- -5'
24322 5' -54.4 NC_005263.2 + 11802 0.69 0.524531
Target:  5'- aGGACGUcGCGUGUCGcUGCauguCGUGGCu -3'
miRNA:   3'- -CCUGUA-CGCAUAGUuGCGc---GCGCCGu -5'
24322 5' -54.4 NC_005263.2 + 12106 0.76 0.23278
Target:  5'- uGGCAUGCGcagCGGCGCGCGCGcCAu -3'
miRNA:   3'- cCUGUACGCauaGUUGCGCGCGCcGU- -5'
24322 5' -54.4 NC_005263.2 + 12850 0.68 0.612372
Target:  5'- cGGGCAgccCGUAUucgauggggcCGGCGUGCGUGGUg -3'
miRNA:   3'- -CCUGUac-GCAUA----------GUUGCGCGCGCCGu -5'
24322 5' -54.4 NC_005263.2 + 14169 0.68 0.601236
Target:  5'- cGGGCcgGCGgc-CggUGUGCGCGaGCu -3'
miRNA:   3'- -CCUGuaCGCauaGuuGCGCGCGC-CGu -5'
24322 5' -54.4 NC_005263.2 + 14433 0.67 0.656993
Target:  5'- --cCAUGCGa--CGGCGUGCGCGcGCGc -3'
miRNA:   3'- ccuGUACGCauaGUUGCGCGCGC-CGU- -5'
24322 5' -54.4 NC_005263.2 + 16404 0.7 0.473099
Target:  5'- cGGCAUcGCGggugcgguacucggcGUCGGCGCugGCGCGGCGg -3'
miRNA:   3'- cCUGUA-CGCa--------------UAGUUGCG--CGCGCCGU- -5'
24322 5' -54.4 NC_005263.2 + 17015 0.67 0.668115
Target:  5'- -aGCGUuCGUAUCGcucgagcaGCGCGuCGCGGCc -3'
miRNA:   3'- ccUGUAcGCAUAGU--------UGCGC-GCGCCGu -5'
24322 5' -54.4 NC_005263.2 + 17512 0.66 0.733721
Target:  5'- aGGAUgaucugAUcGCGcUGUaCAGCGCGCGCaGCGg -3'
miRNA:   3'- -CCUG------UA-CGC-AUA-GUUGCGCGCGcCGU- -5'
24322 5' -54.4 NC_005263.2 + 18449 0.68 0.612372
Target:  5'- cGAgGUGCGcgugaagCAGC-CGCGCGGCu -3'
miRNA:   3'- cCUgUACGCaua----GUUGcGCGCGCCGu -5'
24322 5' -54.4 NC_005263.2 + 18912 0.66 0.712145
Target:  5'- cGGCcUGCGUcgagcgUGAC-CGCGCGGCAc -3'
miRNA:   3'- cCUGuACGCAua----GUUGcGCGCGCCGU- -5'
24322 5' -54.4 NC_005263.2 + 19739 0.66 0.733721
Target:  5'- --cUAUGCG-AUCGGCGCuggcGCGCuGGCGg -3'
miRNA:   3'- ccuGUACGCaUAGUUGCG----CGCG-CCGU- -5'
24322 5' -54.4 NC_005263.2 + 19853 0.69 0.54614
Target:  5'- cGACgAUGCGaacaagGUCAcgGCGaGCGCGGCGa -3'
miRNA:   3'- cCUG-UACGCa-----UAGU--UGCgCGCGCCGU- -5'
24322 5' -54.4 NC_005263.2 + 20711 0.68 0.579054
Target:  5'- cGGuCGUGaCGcagccgGUCAGCGCGC-CGGCc -3'
miRNA:   3'- -CCuGUAC-GCa-----UAGUUGCGCGcGCCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.