miRNA display CGI


Results 1 - 20 of 100 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24322 5' -54.4 NC_005263.2 + 859 0.68 0.579054
Target:  5'- cGGACA-GCGUacccGUCGugccggccgGCGCuucguucaGCGCGGCGg -3'
miRNA:   3'- -CCUGUaCGCA----UAGU---------UGCG--------CGCGCCGU- -5'
24322 5' -54.4 NC_005263.2 + 1593 0.72 0.403432
Target:  5'- uGGACGUGCcgagCAGCGCG-GCGGaCAc -3'
miRNA:   3'- -CCUGUACGcauaGUUGCGCgCGCC-GU- -5'
24322 5' -54.4 NC_005263.2 + 1862 0.67 0.656993
Target:  5'- cGACGUGCGguUCuGGCGCGCcUGGCc -3'
miRNA:   3'- cCUGUACGCauAG-UUGCGCGcGCCGu -5'
24322 5' -54.4 NC_005263.2 + 2428 0.66 0.722979
Target:  5'- cGGCA-GCGUGcCuugguACG-GCGCGGCAa -3'
miRNA:   3'- cCUGUaCGCAUaGu----UGCgCGCGCCGU- -5'
24322 5' -54.4 NC_005263.2 + 2653 0.69 0.524531
Target:  5'- -uGCcgGCGUAUCGGCG-GCGacacCGGCAg -3'
miRNA:   3'- ccUGuaCGCAUAGUUGCgCGC----GCCGU- -5'
24322 5' -54.4 NC_005263.2 + 2673 0.7 0.513848
Target:  5'- aGGCGUGCGUuguggUAGCugauCGCGCGGCc -3'
miRNA:   3'- cCUGUACGCAua---GUUGc---GCGCGCCGu -5'
24322 5' -54.4 NC_005263.2 + 2712 0.68 0.634687
Target:  5'- aGGuGCAUGCG---CAGCGCGCGU-GCAu -3'
miRNA:   3'- -CC-UGUACGCauaGUUGCGCGCGcCGU- -5'
24322 5' -54.4 NC_005263.2 + 3194 0.68 0.601236
Target:  5'- -cGC-UGCGcGUCGGCGaGCGCGGCc -3'
miRNA:   3'- ccUGuACGCaUAGUUGCgCGCGCCGu -5'
24322 5' -54.4 NC_005263.2 + 3491 0.7 0.492759
Target:  5'- -cGCA-GCGaGUCGGgcaaguuguCGCGCGCGGCAa -3'
miRNA:   3'- ccUGUaCGCaUAGUU---------GCGCGCGCCGU- -5'
24322 5' -54.4 NC_005263.2 + 3896 0.68 0.612372
Target:  5'- uGGuCAUG-GUGUCGugguaGCGcCGgGCGGCAa -3'
miRNA:   3'- -CCuGUACgCAUAGU-----UGC-GCgCGCCGU- -5'
24322 5' -54.4 NC_005263.2 + 4553 0.67 0.690245
Target:  5'- cGACG-GCGgcAUUGACGCGUauauaGCGGCAa -3'
miRNA:   3'- cCUGUaCGCa-UAGUUGCGCG-----CGCCGU- -5'
24322 5' -54.4 NC_005263.2 + 5600 0.69 0.568027
Target:  5'- -----gGCGUccGUCAGCGCaucgGCGCGGCu -3'
miRNA:   3'- ccuguaCGCA--UAGUUGCG----CGCGCCGu -5'
24322 5' -54.4 NC_005263.2 + 6602 0.66 0.712145
Target:  5'- cGACGcgaucGCGUucggCGGCGCGCuCGGCGc -3'
miRNA:   3'- cCUGUa----CGCAua--GUUGCGCGcGCCGU- -5'
24322 5' -54.4 NC_005263.2 + 8261 0.67 0.679204
Target:  5'- cGGGUAUGCGcGUucggacggccaCAGCGCGaGCGGCGu -3'
miRNA:   3'- -CCUGUACGCaUA-----------GUUGCGCgCGCCGU- -5'
24322 5' -54.4 NC_005263.2 + 8571 0.66 0.744357
Target:  5'- cGAUcgGCGUGUCGuccguuACGC-CGCGcGCu -3'
miRNA:   3'- cCUGuaCGCAUAGU------UGCGcGCGC-CGu -5'
24322 5' -54.4 NC_005263.2 + 8740 0.69 0.524531
Target:  5'- cGGCGaGCGggGUCGagacguuuuuaACGCuGCGCGGCAg -3'
miRNA:   3'- cCUGUaCGCa-UAGU-----------UGCG-CGCGCCGU- -5'
24322 5' -54.4 NC_005263.2 + 8835 0.72 0.358437
Target:  5'- cGGCGUGCG-AUCAAgcauCGCGCGCaGCu -3'
miRNA:   3'- cCUGUACGCaUAGUU----GCGCGCGcCGu -5'
24322 5' -54.4 NC_005263.2 + 9209 0.67 0.645846
Target:  5'- cGGGCG-GCGc-UCGuACgGCGCGCGGUAc -3'
miRNA:   3'- -CCUGUaCGCauAGU-UG-CGCGCGCCGU- -5'
24322 5' -54.4 NC_005263.2 + 9374 0.69 0.54614
Target:  5'- cGGCGgcUGCGggaauuUCAGCGCG-GCGGCc -3'
miRNA:   3'- cCUGU--ACGCau----AGUUGCGCgCGCCGu -5'
24322 5' -54.4 NC_005263.2 + 9517 0.69 0.54614
Target:  5'- cGGGCugaauCGUG-CGGcCGUGCGCGGCAg -3'
miRNA:   3'- -CCUGuac--GCAUaGUU-GCGCGCGCCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.