miRNA display CGI


Results 1 - 20 of 100 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24322 5' -54.4 NC_005263.2 + 44388 1.11 0.00083
Target:  5'- uGGACAUGCGUAUCAACGCGCGCGGCAu -3'
miRNA:   3'- -CCUGUACGCAUAGUUGCGCGCGCCGU- -5'
24322 5' -54.4 NC_005263.2 + 2653 0.69 0.524531
Target:  5'- -uGCcgGCGUAUCGGCG-GCGacacCGGCAg -3'
miRNA:   3'- ccUGuaCGCAUAGUUGCgCGC----GCCGU- -5'
24322 5' -54.4 NC_005263.2 + 27106 0.69 0.54614
Target:  5'- -----gGCGcuUCGACGgGCGCGGCGa -3'
miRNA:   3'- ccuguaCGCauAGUUGCgCGCGCCGU- -5'
24322 5' -54.4 NC_005263.2 + 25694 0.66 0.733721
Target:  5'- cGGACAcgGCGagcacggCGGCGCGUacguucGCGGCc -3'
miRNA:   3'- -CCUGUa-CGCaua----GUUGCGCG------CGCCGu -5'
24322 5' -54.4 NC_005263.2 + 32989 0.73 0.317075
Target:  5'- -cGCGcUGCGUAUU--CGCGCGCGGCc -3'
miRNA:   3'- ccUGU-ACGCAUAGuuGCGCGCGCCGu -5'
24322 5' -54.4 NC_005263.2 + 31606 0.73 0.34145
Target:  5'- uGGuCAUGCcgGUcgCGACGgcCGCGCGGCGc -3'
miRNA:   3'- -CCuGUACG--CAuaGUUGC--GCGCGCCGU- -5'
24322 5' -54.4 NC_005263.2 + 21180 0.73 0.34987
Target:  5'- gGGGCcgGaCGcg--GACGCGCGCGGCGc -3'
miRNA:   3'- -CCUGuaC-GCauagUUGCGCGCGCCGU- -5'
24322 5' -54.4 NC_005263.2 + 29214 0.72 0.376008
Target:  5'- aGGCcgGCGcguauuugccGUCGGCGCGCaGCGGCGc -3'
miRNA:   3'- cCUGuaCGCa---------UAGUUGCGCG-CGCCGU- -5'
24322 5' -54.4 NC_005263.2 + 10757 0.71 0.422404
Target:  5'- -cGCAUGCGgccGUCGGCaucaaagcuGCGCGCGGUc -3'
miRNA:   3'- ccUGUACGCa--UAGUUG---------CGCGCGCCGu -5'
24322 5' -54.4 NC_005263.2 + 33679 0.7 0.513848
Target:  5'- cGGGC--GCGaAUCuugGCGCaGCGCGGCGg -3'
miRNA:   3'- -CCUGuaCGCaUAGu--UGCG-CGCGCCGU- -5'
24322 5' -54.4 NC_005263.2 + 44835 0.7 0.472075
Target:  5'- cGGACugcgagGCGaUAcUCGACGCcugucuGCGCGGCGa -3'
miRNA:   3'- -CCUGua----CGC-AU-AGUUGCG------CGCGCCGU- -5'
24322 5' -54.4 NC_005263.2 + 33405 0.71 0.412851
Target:  5'- cGGAUcgGCGUcgAUCGccuugagcgccGCGCGCGCGuaGCGg -3'
miRNA:   3'- -CCUGuaCGCA--UAGU-----------UGCGCGCGC--CGU- -5'
24322 5' -54.4 NC_005263.2 + 29310 0.78 0.163568
Target:  5'- cGGCAUGCG---CAuCGCGCGCGGCGa -3'
miRNA:   3'- cCUGUACGCauaGUuGCGCGCGCCGU- -5'
24322 5' -54.4 NC_005263.2 + 33996 0.7 0.492759
Target:  5'- aGGCcgGcCGUGUUGGCuGCGuCGCGGCGc -3'
miRNA:   3'- cCUGuaC-GCAUAGUUG-CGC-GCGCCGU- -5'
24322 5' -54.4 NC_005263.2 + 47372 0.77 0.187688
Target:  5'- uGGGCGgcGCGU-UCGAUGCGCGCGaGCAc -3'
miRNA:   3'- -CCUGUa-CGCAuAGUUGCGCGCGC-CGU- -5'
24322 5' -54.4 NC_005263.2 + 47402 0.72 0.39323
Target:  5'- uGAaaaaGUGCGUcgaguucAUCGGCGCGCuCGGCAa -3'
miRNA:   3'- cCUg---UACGCA-------UAGUUGCGCGcGCCGU- -5'
24322 5' -54.4 NC_005263.2 + 37405 0.7 0.492759
Target:  5'- cGACGUGC--AUC-GCGuCGCGCGGCc -3'
miRNA:   3'- cCUGUACGcaUAGuUGC-GCGCGCCGu -5'
24322 5' -54.4 NC_005263.2 + 8740 0.69 0.524531
Target:  5'- cGGCGaGCGggGUCGagacguuuuuaACGCuGCGCGGCAg -3'
miRNA:   3'- cCUGUaCGCa-UAGU-----------UGCG-CGCGCCGU- -5'
24322 5' -54.4 NC_005263.2 + 12106 0.76 0.23278
Target:  5'- uGGCAUGCGcagCGGCGCGCGCGcCAu -3'
miRNA:   3'- cCUGUACGCauaGUUGCGCGCGCcGU- -5'
24322 5' -54.4 NC_005263.2 + 41708 0.73 0.34987
Target:  5'- cGGGCAaGgagaacauccuCGUAcUCGACGCGgGCGGCAa -3'
miRNA:   3'- -CCUGUaC-----------GCAU-AGUUGCGCgCGCCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.