miRNA display CGI


Results 1 - 20 of 100 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24322 5' -54.4 NC_005263.2 + 44388 1.11 0.00083
Target:  5'- uGGACAUGCGUAUCAACGCGCGCGGCAu -3'
miRNA:   3'- -CCUGUACGCAUAGUUGCGCGCGCCGU- -5'
24322 5' -54.4 NC_005263.2 + 24536 0.78 0.154725
Target:  5'- cGGGCAacgGCGg--CGGCGCGgGCGGCGg -3'
miRNA:   3'- -CCUGUa--CGCauaGUUGCGCgCGCCGU- -5'
24322 5' -54.4 NC_005263.2 + 29310 0.78 0.163568
Target:  5'- cGGCAUGCG---CAuCGCGCGCGGCGa -3'
miRNA:   3'- cCUGUACGCauaGUuGCGCGCGCCGU- -5'
24322 5' -54.4 NC_005263.2 + 47372 0.77 0.187688
Target:  5'- uGGGCGgcGCGU-UCGAUGCGCGCGaGCAc -3'
miRNA:   3'- -CCUGUa-CGCAuAGUUGCGCGCGC-CGU- -5'
24322 5' -54.4 NC_005263.2 + 12106 0.76 0.23278
Target:  5'- uGGCAUGCGcagCGGCGCGCGCGcCAu -3'
miRNA:   3'- cCUGUACGCauaGUUGCGCGCGCcGU- -5'
24322 5' -54.4 NC_005263.2 + 43830 0.75 0.257898
Target:  5'- cGGGCAcgaUGUucGUGUCGaccgggcgcaacaACGUGCGCGGCAu -3'
miRNA:   3'- -CCUGU---ACG--CAUAGU-------------UGCGCGCGCCGU- -5'
24322 5' -54.4 NC_005263.2 + 21165 0.75 0.258571
Target:  5'- cGGCA-GCGacgucAUCAACGUGCGUGGCGa -3'
miRNA:   3'- cCUGUaCGCa----UAGUUGCGCGCGCCGU- -5'
24322 5' -54.4 NC_005263.2 + 33418 0.74 0.284462
Target:  5'- aGGACGgccagGCGUccgacuucguguucGUCGGCGUGUGgGGCAa -3'
miRNA:   3'- -CCUGUa----CGCA--------------UAGUUGCGCGCgCCGU- -5'
24322 5' -54.4 NC_005263.2 + 32989 0.73 0.317075
Target:  5'- -cGCGcUGCGUAUU--CGCGCGCGGCc -3'
miRNA:   3'- ccUGU-ACGCAUAGuuGCGCGCGCCGu -5'
24322 5' -54.4 NC_005263.2 + 31606 0.73 0.34145
Target:  5'- uGGuCAUGCcgGUcgCGACGgcCGCGCGGCGc -3'
miRNA:   3'- -CCuGUACG--CAuaGUUGC--GCGCGCCGU- -5'
24322 5' -54.4 NC_005263.2 + 21180 0.73 0.34987
Target:  5'- gGGGCcgGaCGcg--GACGCGCGCGGCGc -3'
miRNA:   3'- -CCUGuaC-GCauagUUGCGCGCGCCGU- -5'
24322 5' -54.4 NC_005263.2 + 41708 0.73 0.34987
Target:  5'- cGGGCAaGgagaacauccuCGUAcUCGACGCGgGCGGCAa -3'
miRNA:   3'- -CCUGUaC-----------GCAU-AGUUGCGCgCGCCGU- -5'
24322 5' -54.4 NC_005263.2 + 8835 0.72 0.358437
Target:  5'- cGGCGUGCG-AUCAAgcauCGCGCGCaGCu -3'
miRNA:   3'- cCUGUACGCaUAGUU----GCGCGCGcCGu -5'
24322 5' -54.4 NC_005263.2 + 29214 0.72 0.376008
Target:  5'- aGGCcgGCGcguauuugccGUCGGCGCGCaGCGGCGc -3'
miRNA:   3'- cCUGuaCGCa---------UAGUUGCGCG-CGCCGU- -5'
24322 5' -54.4 NC_005263.2 + 47402 0.72 0.39323
Target:  5'- uGAaaaaGUGCGUcgaguucAUCGGCGCGCuCGGCAa -3'
miRNA:   3'- cCUg---UACGCA-------UAGUUGCGCGcGCCGU- -5'
24322 5' -54.4 NC_005263.2 + 38433 0.72 0.394151
Target:  5'- cGACGUGCGUu---ACGUGCucgGCGGCGa -3'
miRNA:   3'- cCUGUACGCAuaguUGCGCG---CGCCGU- -5'
24322 5' -54.4 NC_005263.2 + 1593 0.72 0.403432
Target:  5'- uGGACGUGCcgagCAGCGCG-GCGGaCAc -3'
miRNA:   3'- -CCUGUACGcauaGUUGCGCgCGCC-GU- -5'
24322 5' -54.4 NC_005263.2 + 39070 0.71 0.412851
Target:  5'- cGGACGU-CGUAgccggcUCGcCGuCGCGCGGCAc -3'
miRNA:   3'- -CCUGUAcGCAU------AGUuGC-GCGCGCCGU- -5'
24322 5' -54.4 NC_005263.2 + 33405 0.71 0.412851
Target:  5'- cGGAUcgGCGUcgAUCGccuugagcgccGCGCGCGCGuaGCGg -3'
miRNA:   3'- -CCUGuaCGCA--UAGU-----------UGCGCGCGC--CGU- -5'
24322 5' -54.4 NC_005263.2 + 10757 0.71 0.422404
Target:  5'- -cGCAUGCGgccGUCGGCaucaaagcuGCGCGCGGUc -3'
miRNA:   3'- ccUGUACGCa--UAGUUG---------CGCGCGCCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.