Results 21 - 40 of 100 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24322 | 5' | -54.4 | NC_005263.2 | + | 20979 | 0.69 | 0.54614 |
Target: 5'- cGACGcggcugcgcgccUGCGcGUCGACGUGC-CGGCGu -3' miRNA: 3'- cCUGU------------ACGCaUAGUUGCGCGcGCCGU- -5' |
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24322 | 5' | -54.4 | NC_005263.2 | + | 27106 | 0.69 | 0.54614 |
Target: 5'- -----gGCGcuUCGACGgGCGCGGCGa -3' miRNA: 3'- ccuguaCGCauAGUUGCgCGCGCCGU- -5' |
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24322 | 5' | -54.4 | NC_005263.2 | + | 33405 | 0.71 | 0.412851 |
Target: 5'- cGGAUcgGCGUcgAUCGccuugagcgccGCGCGCGCGuaGCGg -3' miRNA: 3'- -CCUGuaCGCA--UAGU-----------UGCGCGCGC--CGU- -5' |
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24322 | 5' | -54.4 | NC_005263.2 | + | 12106 | 0.76 | 0.23278 |
Target: 5'- uGGCAUGCGcagCGGCGCGCGCGcCAu -3' miRNA: 3'- cCUGUACGCauaGUUGCGCGCGCcGU- -5' |
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24322 | 5' | -54.4 | NC_005263.2 | + | 32907 | 0.67 | 0.656993 |
Target: 5'- cGGAa--GCGcuugcCGACGuCGCGCGGCGg -3' miRNA: 3'- -CCUguaCGCaua--GUUGC-GCGCGCCGU- -5' |
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24322 | 5' | -54.4 | NC_005263.2 | + | 3896 | 0.68 | 0.612372 |
Target: 5'- uGGuCAUG-GUGUCGugguaGCGcCGgGCGGCAa -3' miRNA: 3'- -CCuGUACgCAUAGU-----UGC-GCgCGCCGU- -5' |
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24322 | 5' | -54.4 | NC_005263.2 | + | 2653 | 0.69 | 0.524531 |
Target: 5'- -uGCcgGCGUAUCGGCG-GCGacacCGGCAg -3' miRNA: 3'- ccUGuaCGCAUAGUUGCgCGC----GCCGU- -5' |
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24322 | 5' | -54.4 | NC_005263.2 | + | 47372 | 0.77 | 0.187688 |
Target: 5'- uGGGCGgcGCGU-UCGAUGCGCGCGaGCAc -3' miRNA: 3'- -CCUGUa-CGCAuAGUUGCGCGCGC-CGU- -5' |
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24322 | 5' | -54.4 | NC_005263.2 | + | 14169 | 0.68 | 0.601236 |
Target: 5'- cGGGCcgGCGgc-CggUGUGCGCGaGCu -3' miRNA: 3'- -CCUGuaCGCauaGuuGCGCGCGC-CGu -5' |
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24322 | 5' | -54.4 | NC_005263.2 | + | 29310 | 0.78 | 0.163568 |
Target: 5'- cGGCAUGCG---CAuCGCGCGCGGCGa -3' miRNA: 3'- cCUGUACGCauaGUuGCGCGCGCCGU- -5' |
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24322 | 5' | -54.4 | NC_005263.2 | + | 8740 | 0.69 | 0.524531 |
Target: 5'- cGGCGaGCGggGUCGagacguuuuuaACGCuGCGCGGCAg -3' miRNA: 3'- cCUGUaCGCa-UAGU-----------UGCG-CGCGCCGU- -5' |
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24322 | 5' | -54.4 | NC_005263.2 | + | 39503 | 0.69 | 0.557053 |
Target: 5'- uGGGCAgaguuuaagGCGaagAUgGAaGCGCGCGGCGu -3' miRNA: 3'- -CCUGUa--------CGCa--UAgUUgCGCGCGCCGU- -5' |
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24322 | 5' | -54.4 | NC_005263.2 | + | 33996 | 0.7 | 0.492759 |
Target: 5'- aGGCcgGcCGUGUUGGCuGCGuCGCGGCGc -3' miRNA: 3'- cCUGuaC-GCAUAGUUG-CGC-GCGCCGU- -5' |
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24322 | 5' | -54.4 | NC_005263.2 | + | 10757 | 0.71 | 0.422404 |
Target: 5'- -cGCAUGCGgccGUCGGCaucaaagcuGCGCGCGGUc -3' miRNA: 3'- ccUGUACGCa--UAGUUG---------CGCGCGCCGu -5' |
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24322 | 5' | -54.4 | NC_005263.2 | + | 21180 | 0.73 | 0.34987 |
Target: 5'- gGGGCcgGaCGcg--GACGCGCGCGGCGc -3' miRNA: 3'- -CCUGuaC-GCauagUUGCGCGCGCCGU- -5' |
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24322 | 5' | -54.4 | NC_005263.2 | + | 32989 | 0.73 | 0.317075 |
Target: 5'- -cGCGcUGCGUAUU--CGCGCGCGGCc -3' miRNA: 3'- ccUGU-ACGCAUAGuuGCGCGCGCCGu -5' |
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24322 | 5' | -54.4 | NC_005263.2 | + | 6602 | 0.66 | 0.712145 |
Target: 5'- cGACGcgaucGCGUucggCGGCGCGCuCGGCGc -3' miRNA: 3'- cCUGUa----CGCAua--GUUGCGCGcGCCGU- -5' |
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24322 | 5' | -54.4 | NC_005263.2 | + | 17015 | 0.67 | 0.668115 |
Target: 5'- -aGCGUuCGUAUCGcucgagcaGCGCGuCGCGGCc -3' miRNA: 3'- ccUGUAcGCAUAGU--------UGCGC-GCGCCGu -5' |
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24322 | 5' | -54.4 | NC_005263.2 | + | 37433 | 0.67 | 0.656993 |
Target: 5'- --uCGU-CGUcauacGUCGGCGCGCGCGGUc -3' miRNA: 3'- ccuGUAcGCA-----UAGUUGCGCGCGCCGu -5' |
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24322 | 5' | -54.4 | NC_005263.2 | + | 9792 | 0.68 | 0.623526 |
Target: 5'- -aACGgggGCGccUCGcCGCGUGCGGCAu -3' miRNA: 3'- ccUGUa--CGCauAGUuGCGCGCGCCGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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