Results 21 - 40 of 52 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24324 | 3' | -53.5 | NC_005263.2 | + | 20225 | 0.68 | 0.635257 |
Target: 5'- cCGACUGC-GCGCCGC-CGGcCUuauCCAc -3' miRNA: 3'- -GCUGACGuCGUGGUGuGCUaGAu--GGU- -5' |
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24324 | 3' | -53.5 | NC_005263.2 | + | 20315 | 0.68 | 0.623958 |
Target: 5'- aCGACgGCGauGUACCGCGCGAagcauggcCUGCCGc -3' miRNA: 3'- -GCUGaCGU--CGUGGUGUGCUa-------GAUGGU- -5' |
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24324 | 3' | -53.5 | NC_005263.2 | + | 20983 | 0.67 | 0.713636 |
Target: 5'- gCGGCUGC-GCGCCuGCGCG-UCgacgUGCCGg -3' miRNA: 3'- -GCUGACGuCGUGG-UGUGCuAG----AUGGU- -5' |
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24324 | 3' | -53.5 | NC_005263.2 | + | 21042 | 0.67 | 0.724591 |
Target: 5'- aCGGCgUGCAGCAugcaacgcauauCCACgACGAUCcacaaggcgGCCAg -3' miRNA: 3'- -GCUG-ACGUCGU------------GGUG-UGCUAGa--------UGGU- -5' |
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24324 | 3' | -53.5 | NC_005263.2 | + | 21469 | 0.69 | 0.572235 |
Target: 5'- -cGCUGCGGCGCCACugGcaaauccggcgcaccGUCgauUACCGc -3' miRNA: 3'- gcUGACGUCGUGGUGugC---------------UAG---AUGGU- -5' |
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24324 | 3' | -53.5 | NC_005263.2 | + | 21962 | 0.75 | 0.269409 |
Target: 5'- aCGACgcagGCAuGCugCGCGCgcaGAUCUGCCAu -3' miRNA: 3'- -GCUGa---CGU-CGugGUGUG---CUAGAUGGU- -5' |
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24324 | 3' | -53.5 | NC_005263.2 | + | 22110 | 0.69 | 0.567776 |
Target: 5'- aCGGCUGCcgccGGCACgcugcaaGCGCGAUC-GCCGg -3' miRNA: 3'- -GCUGACG----UCGUGg------UGUGCUAGaUGGU- -5' |
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24324 | 3' | -53.5 | NC_005263.2 | + | 22519 | 0.66 | 0.756823 |
Target: 5'- gCGGCUGCGGC-CUGCuCGAU--GCCGa -3' miRNA: 3'- -GCUGACGUCGuGGUGuGCUAgaUGGU- -5' |
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24324 | 3' | -53.5 | NC_005263.2 | + | 22675 | 0.68 | 0.620569 |
Target: 5'- cCGACgaaccccGCACCGCACGcgccgaggauggcuGUCUGCCAg -3' miRNA: 3'- -GCUGacgu---CGUGGUGUGC--------------UAGAUGGU- -5' |
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24324 | 3' | -53.5 | NC_005263.2 | + | 23023 | 0.71 | 0.481111 |
Target: 5'- cCGGCgUGcCAGCGCCACcCGAaUUGCCGg -3' miRNA: 3'- -GCUG-AC-GUCGUGGUGuGCUaGAUGGU- -5' |
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24324 | 3' | -53.5 | NC_005263.2 | + | 24557 | 0.71 | 0.440221 |
Target: 5'- gCGGCgGCGGCugCGcCACGGUCggcacGCCGa -3' miRNA: 3'- -GCUGaCGUCGugGU-GUGCUAGa----UGGU- -5' |
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24324 | 3' | -53.5 | NC_005263.2 | + | 26186 | 0.7 | 0.545625 |
Target: 5'- aCGGuCUGCGGCcgcgcggcgGCCGCGCGAUgCggcgGCCGu -3' miRNA: 3'- -GCU-GACGUCG---------UGGUGUGCUA-Ga---UGGU- -5' |
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24324 | 3' | -53.5 | NC_005263.2 | + | 26857 | 0.67 | 0.713636 |
Target: 5'- ----aGCAGCACUGCGCGG-CUACUu -3' miRNA: 3'- gcugaCGUCGUGGUGUGCUaGAUGGu -5' |
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24324 | 3' | -53.5 | NC_005263.2 | + | 27612 | 0.66 | 0.756823 |
Target: 5'- uCGACgUGCGGCGCg--ACGGUCgACCAc -3' miRNA: 3'- -GCUG-ACGUCGUGgugUGCUAGaUGGU- -5' |
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24324 | 3' | -53.5 | NC_005263.2 | + | 28123 | 0.66 | 0.756823 |
Target: 5'- aCGGCaGUGGCGCCgucuuGCACG--CUGCCAg -3' miRNA: 3'- -GCUGaCGUCGUGG-----UGUGCuaGAUGGU- -5' |
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24324 | 3' | -53.5 | NC_005263.2 | + | 32003 | 0.68 | 0.609282 |
Target: 5'- uCGGCUGCcguAGCugCGCGggugaacagccggcCGAUCUGCUc -3' miRNA: 3'- -GCUGACG---UCGugGUGU--------------GCUAGAUGGu -5' |
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24324 | 3' | -53.5 | NC_005263.2 | + | 32496 | 0.66 | 0.746197 |
Target: 5'- gCGACgGCAGUuCCgACGCGAUaagcGCCAg -3' miRNA: 3'- -GCUGaCGUCGuGG-UGUGCUAga--UGGU- -5' |
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24324 | 3' | -53.5 | NC_005263.2 | + | 34009 | 0.67 | 0.724591 |
Target: 5'- uGGCUGCGucGCGgCGCGCGAUCcagaGCUg -3' miRNA: 3'- gCUGACGU--CGUgGUGUGCUAGa---UGGu -5' |
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24324 | 3' | -53.5 | NC_005263.2 | + | 34711 | 0.66 | 0.756823 |
Target: 5'- gCGAC-GCGcCugCACACGAUCgugucccgGCCGg -3' miRNA: 3'- -GCUGaCGUcGugGUGUGCUAGa-------UGGU- -5' |
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24324 | 3' | -53.5 | NC_005263.2 | + | 35529 | 0.66 | 0.756823 |
Target: 5'- cCGACUGCgcccGGCGgCGCGCGGgcgggcgCUACg- -3' miRNA: 3'- -GCUGACG----UCGUgGUGUGCUa------GAUGgu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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