miRNA display CGI


Results 1 - 20 of 52 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24324 3' -53.5 NC_005263.2 + 824 0.66 0.735449
Target:  5'- gGACUGCgcuucGGCG-CGCACGucaCUACCGa -3'
miRNA:   3'- gCUGACG-----UCGUgGUGUGCua-GAUGGU- -5'
24324 3' -53.5 NC_005263.2 + 1953 0.69 0.601393
Target:  5'- gCGAC-GcCGGCaACCGCGuCGAUCUGCUg -3'
miRNA:   3'- -GCUGaC-GUCG-UGGUGU-GCUAGAUGGu -5'
24324 3' -53.5 NC_005263.2 + 3236 0.71 0.481111
Target:  5'- uGACgccggGCAGCAUCuGCACGAUCUGg-- -3'
miRNA:   3'- gCUGa----CGUCGUGG-UGUGCUAGAUggu -5'
24324 3' -53.5 NC_005263.2 + 3333 0.68 0.623958
Target:  5'- aCGuCUGCgcgccgccGGCGCCgcGCGCGGUCgagcgACCAg -3'
miRNA:   3'- -GCuGACG--------UCGUGG--UGUGCUAGa----UGGU- -5'
24324 3' -53.5 NC_005263.2 + 3427 0.69 0.601393
Target:  5'- -uGCUGCGGCGCCGuCGCGAcCUgguugACCu -3'
miRNA:   3'- gcUGACGUCGUGGU-GUGCUaGA-----UGGu -5'
24324 3' -53.5 NC_005263.2 + 5758 0.71 0.47071
Target:  5'- -cGCUGCAGCAgCACGCGAUacGCUu -3'
miRNA:   3'- gcUGACGUCGUgGUGUGCUAgaUGGu -5'
24324 3' -53.5 NC_005263.2 + 6427 0.72 0.401382
Target:  5'- aCGGCcGCAGU-CCGCgcccgACGAUCUGCCGc -3'
miRNA:   3'- -GCUGaCGUCGuGGUG-----UGCUAGAUGGU- -5'
24324 3' -53.5 NC_005263.2 + 9419 0.66 0.755766
Target:  5'- gCGGCUGCGGCgcuguuaGCCGCGCaccuuGAUCUugGCgAg -3'
miRNA:   3'- -GCUGACGUCG-------UGGUGUG-----CUAGA--UGgU- -5'
24324 3' -53.5 NC_005263.2 + 9478 0.66 0.735449
Target:  5'- cCGGCUGCAGCugacGCUuCACGAU--GCCc -3'
miRNA:   3'- -GCUGACGUCG----UGGuGUGCUAgaUGGu -5'
24324 3' -53.5 NC_005263.2 + 9550 0.67 0.680312
Target:  5'- cCGAC-GCGGCGCU-CGCGGcUUGCCAg -3'
miRNA:   3'- -GCUGaCGUCGUGGuGUGCUaGAUGGU- -5'
24324 3' -53.5 NC_005263.2 + 10021 0.67 0.691485
Target:  5'- gGGC-GCAGCACCGCcgcCGAgCUGCUc -3'
miRNA:   3'- gCUGaCGUCGUGGUGu--GCUaGAUGGu -5'
24324 3' -53.5 NC_005263.2 + 10762 0.69 0.578938
Target:  5'- gCGGCcGUcggcaucaaAGCugCGCGCGGUCUGCUu -3'
miRNA:   3'- -GCUGaCG---------UCGugGUGUGCUAGAUGGu -5'
24324 3' -53.5 NC_005263.2 + 13465 0.67 0.680312
Target:  5'- gGGCUGCcuGCGCUGCcauggggaACGAUCUACg- -3'
miRNA:   3'- gCUGACGu-CGUGGUG--------UGCUAGAUGgu -5'
24324 3' -53.5 NC_005263.2 + 13822 0.71 0.440221
Target:  5'- uCGGCUGguGCAgCCACaguuacauuuaGCGGUgCUGCCGc -3'
miRNA:   3'- -GCUGACguCGU-GGUG-----------UGCUA-GAUGGU- -5'
24324 3' -53.5 NC_005263.2 + 14103 0.69 0.567776
Target:  5'- cCGGCUGCgcGGCggucGCCGuCGCGAUCguaGCCGc -3'
miRNA:   3'- -GCUGACG--UCG----UGGU-GUGCUAGa--UGGU- -5'
24324 3' -53.5 NC_005263.2 + 14817 0.66 0.767316
Target:  5'- gGACaGCGGCACCuGCugGuacAUCgccgACCAc -3'
miRNA:   3'- gCUGaCGUCGUGG-UGugC---UAGa---UGGU- -5'
24324 3' -53.5 NC_005263.2 + 15445 0.68 0.635257
Target:  5'- aCGGCgcgagGCAGCGCgaaaugaGCgACGAUUUGCCGu -3'
miRNA:   3'- -GCUGa----CGUCGUGg------UG-UGCUAGAUGGU- -5'
24324 3' -53.5 NC_005263.2 + 15891 0.69 0.601393
Target:  5'- -cGCUGCAGCuuuaCACGCuGAUCUcGCCGc -3'
miRNA:   3'- gcUGACGUCGug--GUGUG-CUAGA-UGGU- -5'
24324 3' -53.5 NC_005263.2 + 16486 0.7 0.534653
Target:  5'- aCGGC-GCuGCGCCGCGCGGccgUCgcgACCGg -3'
miRNA:   3'- -GCUGaCGuCGUGGUGUGCU---AGa--UGGU- -5'
24324 3' -53.5 NC_005263.2 + 16715 0.67 0.691485
Target:  5'- -aGCUGCAGCgcaccuACCGCGCGAgCaGCCc -3'
miRNA:   3'- gcUGACGUCG------UGGUGUGCUaGaUGGu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.