miRNA display CGI


Results 1 - 20 of 52 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24324 3' -53.5 NC_005263.2 + 44719 1.09 0.001208
Target:  5'- cCGACUGCAGCACCACACGAUCUACCAu -3'
miRNA:   3'- -GCUGACGUCGUGGUGUGCUAGAUGGU- -5'
24324 3' -53.5 NC_005263.2 + 44071 0.77 0.223666
Target:  5'- gCGGCgGCAGCgggGCUAuCACGAUCUGCCu -3'
miRNA:   3'- -GCUGaCGUCG---UGGU-GUGCUAGAUGGu -5'
24324 3' -53.5 NC_005263.2 + 21962 0.75 0.269409
Target:  5'- aCGACgcagGCAuGCugCGCGCgcaGAUCUGCCAu -3'
miRNA:   3'- -GCUGa---CGU-CGugGUGUG---CUAGAUGGU- -5'
24324 3' -53.5 NC_005263.2 + 6427 0.72 0.401382
Target:  5'- aCGGCcGCAGU-CCGCgcccgACGAUCUGCCGc -3'
miRNA:   3'- -GCUGaCGUCGuGGUG-----UGCUAGAUGGU- -5'
24324 3' -53.5 NC_005263.2 + 24557 0.71 0.440221
Target:  5'- gCGGCgGCGGCugCGcCACGGUCggcacGCCGa -3'
miRNA:   3'- -GCUGaCGUCGugGU-GUGCUAGa----UGGU- -5'
24324 3' -53.5 NC_005263.2 + 13822 0.71 0.440221
Target:  5'- uCGGCUGguGCAgCCACaguuacauuuaGCGGUgCUGCCGc -3'
miRNA:   3'- -GCUGACguCGU-GGUG-----------UGCUA-GAUGGU- -5'
24324 3' -53.5 NC_005263.2 + 5758 0.71 0.47071
Target:  5'- -cGCUGCAGCAgCACGCGAUacGCUu -3'
miRNA:   3'- gcUGACGUCGUgGUGUGCUAgaUGGu -5'
24324 3' -53.5 NC_005263.2 + 3236 0.71 0.481111
Target:  5'- uGACgccggGCAGCAUCuGCACGAUCUGg-- -3'
miRNA:   3'- gCUGa----CGUCGUGG-UGUGCUAGAUggu -5'
24324 3' -53.5 NC_005263.2 + 23023 0.71 0.481111
Target:  5'- cCGGCgUGcCAGCGCCACcCGAaUUGCCGg -3'
miRNA:   3'- -GCUG-AC-GUCGUGGUGuGCUaGAUGGU- -5'
24324 3' -53.5 NC_005263.2 + 16486 0.7 0.534653
Target:  5'- aCGGC-GCuGCGCCGCGCGGccgUCgcgACCGg -3'
miRNA:   3'- -GCUGaCGuCGUGGUGUGCU---AGa--UGGU- -5'
24324 3' -53.5 NC_005263.2 + 26186 0.7 0.545625
Target:  5'- aCGGuCUGCGGCcgcgcggcgGCCGCGCGAUgCggcgGCCGu -3'
miRNA:   3'- -GCU-GACGUCG---------UGGUGUGCUA-Ga---UGGU- -5'
24324 3' -53.5 NC_005263.2 + 40562 0.69 0.556669
Target:  5'- uCGACcuuggGUGGgACUugAUGAUCUGCCAu -3'
miRNA:   3'- -GCUGa----CGUCgUGGugUGCUAGAUGGU- -5'
24324 3' -53.5 NC_005263.2 + 14103 0.69 0.567776
Target:  5'- cCGGCUGCgcGGCggucGCCGuCGCGAUCguaGCCGc -3'
miRNA:   3'- -GCUGACG--UCG----UGGU-GUGCUAGa--UGGU- -5'
24324 3' -53.5 NC_005263.2 + 48023 0.69 0.567776
Target:  5'- cCGGCggGCAgGCGCUAUGCGAUuaCUACCu -3'
miRNA:   3'- -GCUGa-CGU-CGUGGUGUGCUA--GAUGGu -5'
24324 3' -53.5 NC_005263.2 + 22110 0.69 0.567776
Target:  5'- aCGGCUGCcgccGGCACgcugcaaGCGCGAUC-GCCGg -3'
miRNA:   3'- -GCUGACG----UCGUGg------UGUGCUAGaUGGU- -5'
24324 3' -53.5 NC_005263.2 + 21469 0.69 0.572235
Target:  5'- -cGCUGCGGCGCCACugGcaaauccggcgcaccGUCgauUACCGc -3'
miRNA:   3'- gcUGACGUCGUGGUGugC---------------UAG---AUGGU- -5'
24324 3' -53.5 NC_005263.2 + 10762 0.69 0.578938
Target:  5'- gCGGCcGUcggcaucaaAGCugCGCGCGGUCUGCUu -3'
miRNA:   3'- -GCUGaCG---------UCGugGUGUGCUAGAUGGu -5'
24324 3' -53.5 NC_005263.2 + 15891 0.69 0.601393
Target:  5'- -cGCUGCAGCuuuaCACGCuGAUCUcGCCGc -3'
miRNA:   3'- gcUGACGUCGug--GUGUG-CUAGA-UGGU- -5'
24324 3' -53.5 NC_005263.2 + 1953 0.69 0.601393
Target:  5'- gCGAC-GcCGGCaACCGCGuCGAUCUGCUg -3'
miRNA:   3'- -GCUGaC-GUCG-UGGUGU-GCUAGAUGGu -5'
24324 3' -53.5 NC_005263.2 + 3427 0.69 0.601393
Target:  5'- -uGCUGCGGCGCCGuCGCGAcCUgguugACCu -3'
miRNA:   3'- gcUGACGUCGUGGU-GUGCUaGA-----UGGu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.