miRNA display CGI


Results 1 - 20 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24324 3' -53.5 NC_005263.2 + 44719 1.09 0.001208
Target:  5'- cCGACUGCAGCACCACACGAUCUACCAu -3'
miRNA:   3'- -GCUGACGUCGUGGUGUGCUAGAUGGU- -5'
24324 3' -53.5 NC_005263.2 + 9550 0.67 0.680312
Target:  5'- cCGAC-GCGGCGCU-CGCGGcUUGCCAg -3'
miRNA:   3'- -GCUGaCGUCGUGGuGUGCUaGAUGGU- -5'
24324 3' -53.5 NC_005263.2 + 20983 0.67 0.713636
Target:  5'- gCGGCUGC-GCGCCuGCGCG-UCgacgUGCCGg -3'
miRNA:   3'- -GCUGACGuCGUGG-UGUGCuAG----AUGGU- -5'
24324 3' -53.5 NC_005263.2 + 14817 0.66 0.767316
Target:  5'- gGACaGCGGCACCuGCugGuacAUCgccgACCAc -3'
miRNA:   3'- gCUGaCGUCGUGG-UGugC---UAGa---UGGU- -5'
24324 3' -53.5 NC_005263.2 + 23023 0.71 0.481111
Target:  5'- cCGGCgUGcCAGCGCCACcCGAaUUGCCGg -3'
miRNA:   3'- -GCUG-AC-GUCGUGGUGuGCUaGAUGGU- -5'
24324 3' -53.5 NC_005263.2 + 14103 0.69 0.567776
Target:  5'- cCGGCUGCgcGGCggucGCCGuCGCGAUCguaGCCGc -3'
miRNA:   3'- -GCUGACG--UCG----UGGU-GUGCUAGa--UGGU- -5'
24324 3' -53.5 NC_005263.2 + 3427 0.69 0.601393
Target:  5'- -uGCUGCGGCGCCGuCGCGAcCUgguugACCu -3'
miRNA:   3'- gcUGACGUCGUGGU-GUGCUaGA-----UGGu -5'
24324 3' -53.5 NC_005263.2 + 1953 0.69 0.601393
Target:  5'- gCGAC-GcCGGCaACCGCGuCGAUCUGCUg -3'
miRNA:   3'- -GCUGaC-GUCG-UGGUGU-GCUAGAUGGu -5'
24324 3' -53.5 NC_005263.2 + 45417 0.68 0.612666
Target:  5'- --cCUGCcgAGCgGCCGCGCGAUCagcUACCAc -3'
miRNA:   3'- gcuGACG--UCG-UGGUGUGCUAG---AUGGU- -5'
24324 3' -53.5 NC_005263.2 + 41741 0.68 0.669092
Target:  5'- gCGGCaacuucggGCGGCACgGCGCGAUCaACgAg -3'
miRNA:   3'- -GCUGa-------CGUCGUGgUGUGCUAGaUGgU- -5'
24324 3' -53.5 NC_005263.2 + 15445 0.68 0.635257
Target:  5'- aCGGCgcgagGCAGCGCgaaaugaGCgACGAUUUGCCGu -3'
miRNA:   3'- -GCUGa----CGUCGUGg------UG-UGCUAGAUGGU- -5'
24324 3' -53.5 NC_005263.2 + 36303 0.68 0.612666
Target:  5'- aCGACaUGCAGCGaCACGCGAcgUCcugcGCCAu -3'
miRNA:   3'- -GCUG-ACGUCGUgGUGUGCU--AGa---UGGU- -5'
24324 3' -53.5 NC_005263.2 + 44071 0.77 0.223666
Target:  5'- gCGGCgGCAGCgggGCUAuCACGAUCUGCCu -3'
miRNA:   3'- -GCUGaCGUCG---UGGU-GUGCUAGAUGGu -5'
24324 3' -53.5 NC_005263.2 + 20225 0.68 0.635257
Target:  5'- cCGACUGC-GCGCCGC-CGGcCUuauCCAc -3'
miRNA:   3'- -GCUGACGuCGUGGUGuGCUaGAu--GGU- -5'
24324 3' -53.5 NC_005263.2 + 21962 0.75 0.269409
Target:  5'- aCGACgcagGCAuGCugCGCGCgcaGAUCUGCCAu -3'
miRNA:   3'- -GCUGa---CGU-CGugGUGUG---CUAGAUGGU- -5'
24324 3' -53.5 NC_005263.2 + 32003 0.68 0.609282
Target:  5'- uCGGCUGCcguAGCugCGCGggugaacagccggcCGAUCUGCUc -3'
miRNA:   3'- -GCUGACG---UCGugGUGU--------------GCUAGAUGGu -5'
24324 3' -53.5 NC_005263.2 + 42248 0.68 0.657835
Target:  5'- cCGcCUGCGGCucgacuucgACCGCACGAcg-GCCGa -3'
miRNA:   3'- -GCuGACGUCG---------UGGUGUGCUagaUGGU- -5'
24324 3' -53.5 NC_005263.2 + 10021 0.67 0.691485
Target:  5'- gGGC-GCAGCACCGCcgcCGAgCUGCUc -3'
miRNA:   3'- gCUGaCGUCGUGGUGu--GCUaGAUGGu -5'
24324 3' -53.5 NC_005263.2 + 3236 0.71 0.481111
Target:  5'- uGACgccggGCAGCAUCuGCACGAUCUGg-- -3'
miRNA:   3'- gCUGa----CGUCGUGG-UGUGCUAGAUggu -5'
24324 3' -53.5 NC_005263.2 + 10762 0.69 0.578938
Target:  5'- gCGGCcGUcggcaucaaAGCugCGCGCGGUCUGCUu -3'
miRNA:   3'- -GCUGaCG---------UCGugGUGUGCUAGAUGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.