miRNA display CGI


Results 21 - 40 of 223 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24324 5' -64.7 NC_005263.2 + 22165 0.72 0.098208
Target:  5'- -aCGCUCGcauugcgccaagcGCCGgGCGaacCGGUGCUGGCg -3'
miRNA:   3'- caGCGAGC-------------UGGCgCGC---GCCGCGGCCG- -5'
24324 5' -64.7 NC_005263.2 + 30281 0.72 0.093331
Target:  5'- -gCGCaaUCgGGCCGCGCGCGGCauccUCGGCc -3'
miRNA:   3'- caGCG--AG-CUGGCGCGCGCCGc---GGCCG- -5'
24324 5' -64.7 NC_005263.2 + 3300 0.74 0.073195
Target:  5'- cUC-CUUGugCGCGCgGCGGCGCgCGGUu -3'
miRNA:   3'- cAGcGAGCugGCGCG-CGCCGCG-GCCG- -5'
24324 5' -64.7 NC_005263.2 + 29184 0.77 0.043144
Target:  5'- -gCGCUCGugC-CGCGCGGUcacgcucgacgcagGCCGGCg -3'
miRNA:   3'- caGCGAGCugGcGCGCGCCG--------------CGGCCG- -5'
24324 5' -64.7 NC_005263.2 + 18712 0.71 0.118956
Target:  5'- -gCGCgggCGGCaacccuuuccuguaaGCGCGuCGGCGCCGGg -3'
miRNA:   3'- caGCGa--GCUGg--------------CGCGC-GCCGCGGCCg -5'
24324 5' -64.7 NC_005263.2 + 14055 0.72 0.103878
Target:  5'- -cCGCgUCGAgCGCauugaGCGCGccGCGCCGGCc -3'
miRNA:   3'- caGCG-AGCUgGCG-----CGCGC--CGCGGCCG- -5'
24324 5' -64.7 NC_005263.2 + 20974 0.73 0.085631
Target:  5'- aUCGCcgacgCGGCUGCGCGCcugcgcgucgacGUGCCGGCg -3'
miRNA:   3'- cAGCGa----GCUGGCGCGCGc-----------CGCGGCCG- -5'
24324 5' -64.7 NC_005263.2 + 9896 0.78 0.03299
Target:  5'- -aUGCUCGucguCgGCGCGCGGCGUCGGg -3'
miRNA:   3'- caGCGAGCu---GgCGCGCGCCGCGGCCg -5'
24324 5' -64.7 NC_005263.2 + 1116 0.72 0.103878
Target:  5'- aGUCGCgcgCGAaguCCGCGCcguGCuGCGCaCGGCg -3'
miRNA:   3'- -CAGCGa--GCU---GGCGCG---CGcCGCG-GCCG- -5'
24324 5' -64.7 NC_005263.2 + 38335 0.81 0.019438
Target:  5'- -gCGCgcgCGACCGUGCacGCGGCGaCCGGCg -3'
miRNA:   3'- caGCGa--GCUGGCGCG--CGCCGC-GGCCG- -5'
24324 5' -64.7 NC_005263.2 + 19959 0.73 0.088445
Target:  5'- -gCGCUCG--CGUGCuCGGCGCUGGCa -3'
miRNA:   3'- caGCGAGCugGCGCGcGCCGCGGCCG- -5'
24324 5' -64.7 NC_005263.2 + 37434 0.72 0.098471
Target:  5'- cGUCGUcauacgUCGG-CGCGCGCGGUcuGCgCGGCg -3'
miRNA:   3'- -CAGCG------AGCUgGCGCGCGCCG--CG-GCCG- -5'
24324 5' -64.7 NC_005263.2 + 20389 0.73 0.079394
Target:  5'- aUUGcCUCGACCGagcaaGCcuauGCGGcCGCCGGCg -3'
miRNA:   3'- cAGC-GAGCUGGCg----CG----CGCC-GCGGCCG- -5'
24324 5' -64.7 NC_005263.2 + 45840 0.74 0.075208
Target:  5'- -cCGCaaccUUGGCCgaGCGCGCGGCGCgcuaCGGCa -3'
miRNA:   3'- caGCG----AGCUGG--CGCGCGCCGCG----GCCG- -5'
24324 5' -64.7 NC_005263.2 + 17808 0.74 0.063882
Target:  5'- -aCGC-CGGCCGCGCcCGGCGCUGucGCg -3'
miRNA:   3'- caGCGaGCUGGCGCGcGCCGCGGC--CG- -5'
24324 5' -64.7 NC_005263.2 + 21188 0.76 0.044719
Target:  5'- -aCGCg-GA-CGCGCGCGGCGCgGGCg -3'
miRNA:   3'- caGCGagCUgGCGCGCGCCGCGgCCG- -5'
24324 5' -64.7 NC_005263.2 + 14122 0.71 0.125077
Target:  5'- cGUCGCgaUCGuaGCCGCagcggccaGCGCGGCcGCCuuGGCg -3'
miRNA:   3'- -CAGCG--AGC--UGGCG--------CGCGCCG-CGG--CCG- -5'
24324 5' -64.7 NC_005263.2 + 26488 0.71 0.12182
Target:  5'- cGUCGCcgcacugcgccUUGAUguaacuguUGCGCGCGGCgucgacGCCGGCg -3'
miRNA:   3'- -CAGCG-----------AGCUG--------GCGCGCGCCG------CGGCCG- -5'
24324 5' -64.7 NC_005263.2 + 47428 0.71 0.112515
Target:  5'- -gCGCUCGGCaagGCGCGCuacgaugaGGCguucgaucugGCCGGCa -3'
miRNA:   3'- caGCGAGCUGg--CGCGCG--------CCG----------CGGCCG- -5'
24324 5' -64.7 NC_005263.2 + 30241 0.72 0.106686
Target:  5'- uUCGCggCGAagCGUGCGCGGUagucGUCGGCg -3'
miRNA:   3'- cAGCGa-GCUg-GCGCGCGCCG----CGGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.