Results 1 - 20 of 223 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24324 | 5' | -64.7 | NC_005263.2 | + | 44759 | 1.1 | 0.000098 |
Target: 5'- gGUCGCUCGACCGCGCGCGGCGCCGGCg -3' miRNA: 3'- -CAGCGAGCUGGCGCGCGCCGCGGCCG- -5' |
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24324 | 5' | -64.7 | NC_005263.2 | + | 20974 | 0.73 | 0.085631 |
Target: 5'- aUCGCcgacgCGGCUGCGCGCcugcgcgucgacGUGCCGGCg -3' miRNA: 3'- cAGCGa----GCUGGCGCGCGc-----------CGCGGCCG- -5' |
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24324 | 5' | -64.7 | NC_005263.2 | + | 30281 | 0.72 | 0.093331 |
Target: 5'- -gCGCaaUCgGGCCGCGCGCGGCauccUCGGCc -3' miRNA: 3'- caGCG--AG-CUGGCGCGCGCCGc---GGCCG- -5' |
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24324 | 5' | -64.7 | NC_005263.2 | + | 12478 | 0.65 | 0.286782 |
Target: 5'- -aCGauacCGGCgGCGCGCauugcggcauccuGcGCGCCGGCu -3' miRNA: 3'- caGCga--GCUGgCGCGCG-------------C-CGCGGCCG- -5' |
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24324 | 5' | -64.7 | NC_005263.2 | + | 21188 | 0.76 | 0.044719 |
Target: 5'- -aCGCg-GA-CGCGCGCGGCGCgGGCg -3' miRNA: 3'- caGCGagCUgGCGCGCGCCGCGgCCG- -5' |
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24324 | 5' | -64.7 | NC_005263.2 | + | 9525 | 0.76 | 0.049925 |
Target: 5'- aUCGUgCGGCCGUGCGCGGCaGCgaccgacgCGGCg -3' miRNA: 3'- cAGCGaGCUGGCGCGCGCCG-CG--------GCCG- -5' |
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24324 | 5' | -64.7 | NC_005263.2 | + | 17808 | 0.74 | 0.063882 |
Target: 5'- -aCGC-CGGCCGCGCcCGGCGCUGucGCg -3' miRNA: 3'- caGCGaGCUGGCGCGcGCCGCGGC--CG- -5' |
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24324 | 5' | -64.7 | NC_005263.2 | + | 6599 | 0.74 | 0.065648 |
Target: 5'- aGUCGacgCGAUCGCGUucgGCGGCGCgcuCGGCg -3' miRNA: 3'- -CAGCga-GCUGGCGCG---CGCCGCG---GCCG- -5' |
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24324 | 5' | -64.7 | NC_005263.2 | + | 45840 | 0.74 | 0.075208 |
Target: 5'- -cCGCaaccUUGGCCgaGCGCGCGGCGCgcuaCGGCa -3' miRNA: 3'- caGCG----AGCUGG--CGCGCGCCGCG----GCCG- -5' |
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24324 | 5' | -64.7 | NC_005263.2 | + | 9024 | 0.73 | 0.083803 |
Target: 5'- uUCGU---GCCGCGCGaCGGCgaGCCGGCu -3' miRNA: 3'- cAGCGagcUGGCGCGC-GCCG--CGGCCG- -5' |
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24324 | 5' | -64.7 | NC_005263.2 | + | 39109 | 0.73 | 0.079394 |
Target: 5'- -aCGCgCGACuCGUGCGcCGuGCGUCGGCg -3' miRNA: 3'- caGCGaGCUG-GCGCGC-GC-CGCGGCCG- -5' |
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24324 | 5' | -64.7 | NC_005263.2 | + | 3300 | 0.74 | 0.073195 |
Target: 5'- cUC-CUUGugCGCGCgGCGGCGCgCGGUu -3' miRNA: 3'- cAGcGAGCugGCGCG-CGCCGCG-GCCG- -5' |
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24324 | 5' | -64.7 | NC_005263.2 | + | 38335 | 0.81 | 0.019438 |
Target: 5'- -gCGCgcgCGACCGUGCacGCGGCGaCCGGCg -3' miRNA: 3'- caGCGa--GCUGGCGCG--CGCCGC-GGCCG- -5' |
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24324 | 5' | -64.7 | NC_005263.2 | + | 20389 | 0.73 | 0.079394 |
Target: 5'- aUUGcCUCGACCGagcaaGCcuauGCGGcCGCCGGCg -3' miRNA: 3'- cAGC-GAGCUGGCg----CG----CGCC-GCGGCCG- -5' |
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24324 | 5' | -64.7 | NC_005263.2 | + | 9896 | 0.78 | 0.03299 |
Target: 5'- -aUGCUCGucguCgGCGCGCGGCGUCGGg -3' miRNA: 3'- caGCGAGCu---GgCGCGCGCCGCGGCCg -5' |
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24324 | 5' | -64.7 | NC_005263.2 | + | 20220 | 0.74 | 0.071233 |
Target: 5'- uUUGCcCGACUGCGCGC--CGCCGGCc -3' miRNA: 3'- cAGCGaGCUGGCGCGCGccGCGGCCG- -5' |
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24324 | 5' | -64.7 | NC_005263.2 | + | 31616 | 0.73 | 0.083803 |
Target: 5'- gGUCGCgaCGGCCGCGCgGCGcaGCGCCGu- -3' miRNA: 3'- -CAGCGa-GCUGGCGCG-CGC--CGCGGCcg -5' |
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24324 | 5' | -64.7 | NC_005263.2 | + | 19959 | 0.73 | 0.088445 |
Target: 5'- -gCGCUCG--CGUGCuCGGCGCUGGCa -3' miRNA: 3'- caGCGAGCugGCGCGcGCCGCGGCCG- -5' |
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24324 | 5' | -64.7 | NC_005263.2 | + | 29184 | 0.77 | 0.043144 |
Target: 5'- -gCGCUCGugC-CGCGCGGUcacgcucgacgcagGCCGGCg -3' miRNA: 3'- caGCGAGCugGcGCGCGCCG--------------CGGCCG- -5' |
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24324 | 5' | -64.7 | NC_005263.2 | + | 21897 | 0.76 | 0.049925 |
Target: 5'- uUCGCgaaCGGCCGCcgcaucGCGCGGCcGCCGcGCg -3' miRNA: 3'- cAGCGa--GCUGGCG------CGCGCCG-CGGC-CG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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