miRNA display CGI


Results 1 - 20 of 223 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24324 5' -64.7 NC_005263.2 + 12478 0.65 0.286782
Target:  5'- -aCGauacCGGCgGCGCGCauugcggcauccuGcGCGCCGGCu -3'
miRNA:   3'- caGCga--GCUGgCGCGCG-------------C-CGCGGCCG- -5'
24324 5' -64.7 NC_005263.2 + 36601 0.66 0.261226
Target:  5'- aUCGCgcgCGACCaGUGCaacaaGGCGaCGGCg -3'
miRNA:   3'- cAGCGa--GCUGG-CGCGcg---CCGCgGCCG- -5'
24324 5' -64.7 NC_005263.2 + 24706 0.66 0.261226
Target:  5'- -gCGC-CGAaCGUGCcggGCGGCGCaGGCg -3'
miRNA:   3'- caGCGaGCUgGCGCG---CGCCGCGgCCG- -5'
24324 5' -64.7 NC_005263.2 + 29458 0.66 0.260596
Target:  5'- uUCGC-CGGCaGCGUaccgccaGCGGCGcCCGGg -3'
miRNA:   3'- cAGCGaGCUGgCGCG-------CGCCGC-GGCCg -5'
24324 5' -64.7 NC_005263.2 + 43064 0.66 0.257463
Target:  5'- cGUCgGCcaauagUCGGCCGCcgggccggcugucgaGCGCGGCGgaaGGCa -3'
miRNA:   3'- -CAG-CG------AGCUGGCG---------------CGCGCCGCgg-CCG- -5'
24324 5' -64.7 NC_005263.2 + 29344 0.66 0.254979
Target:  5'- aUCaCUuucCGGgUGCGCGagcaGGCGCCGGUa -3'
miRNA:   3'- cAGcGA---GCUgGCGCGCg---CCGCGGCCG- -5'
24324 5' -64.7 NC_005263.2 + 1168 0.66 0.254979
Target:  5'- cGUCGCggCGACUugugccucguGCuGCGCGGCagcgcguucuuCCGGCg -3'
miRNA:   3'- -CAGCGa-GCUGG----------CG-CGCGCCGc----------GGCCG- -5'
24324 5' -64.7 NC_005263.2 + 10590 0.66 0.248855
Target:  5'- aUUGCUCGAuCUGCauGCGCuuggcaaGCGCCGGa -3'
miRNA:   3'- cAGCGAGCU-GGCG--CGCGc------CGCGGCCg -5'
24324 5' -64.7 NC_005263.2 + 46189 0.66 0.248855
Target:  5'- -gCGCUCGugCaGaCGCGCGGCugguacuuccuGaUCGGCa -3'
miRNA:   3'- caGCGAGCugG-C-GCGCGCCG-----------C-GGCCG- -5'
24324 5' -64.7 NC_005263.2 + 6241 0.66 0.261226
Target:  5'- aUCGCUCG-CgGCcagGCGCGGUcguGCCgucgGGCa -3'
miRNA:   3'- cAGCGAGCuGgCG---CGCGCCG---CGG----CCG- -5'
24324 5' -64.7 NC_005263.2 + 34489 0.66 0.26376
Target:  5'- -gCGUUCGGCCGCGCGCaccCGUauuucaagaucaaaGGCg -3'
miRNA:   3'- caGCGAGCUGGCGCGCGcc-GCGg-------------CCG- -5'
24324 5' -64.7 NC_005263.2 + 16766 0.66 0.267597
Target:  5'- aGUCGCgccugaCGGCCGCcgGCGUauCGCCGGa -3'
miRNA:   3'- -CAGCGa-----GCUGGCG--CGCGccGCGGCCg -5'
24324 5' -64.7 NC_005263.2 + 6722 0.66 0.282726
Target:  5'- -aUGCUCGAgCGCcacacguacacacucGCGCGucacguccaucgcGCGCCGGg -3'
miRNA:   3'- caGCGAGCUgGCG---------------CGCGC-------------CGCGGCCg -5'
24324 5' -64.7 NC_005263.2 + 2429 0.66 0.280047
Target:  5'- -cCGCUCGACgaguuguuucuggCGCaaCGCGGCcaGCuCGGCa -3'
miRNA:   3'- caGCGAGCUG-------------GCGc-GCGCCG--CG-GCCG- -5'
24324 5' -64.7 NC_005263.2 + 45785 0.66 0.274093
Target:  5'- -gUGCUCGcguuCCGCcaguucaacGCGgGcGUGCCGGCc -3'
miRNA:   3'- caGCGAGCu---GGCG---------CGCgC-CGCGGCCG- -5'
24324 5' -64.7 NC_005263.2 + 28102 0.66 0.274093
Target:  5'- -gCGCggcCGAUCGCGUcguugacggcaGUGGCGCCGucuuGCa -3'
miRNA:   3'- caGCGa--GCUGGCGCG-----------CGCCGCGGC----CG- -5'
24324 5' -64.7 NC_005263.2 + 9370 0.66 0.274093
Target:  5'- -gCGCcggCGGCUGCgggaauuucaGCGCGGCgGCCaGCu -3'
miRNA:   3'- caGCGa--GCUGGCG----------CGCGCCG-CGGcCG- -5'
24324 5' -64.7 NC_005263.2 + 27114 0.66 0.273438
Target:  5'- -aCGCcggcacgUCGACgCGCagGCGCGcagccGCGUCGGCg -3'
miRNA:   3'- caGCG-------AGCUG-GCG--CGCGC-----CGCGGCCG- -5'
24324 5' -64.7 NC_005263.2 + 41051 0.66 0.273438
Target:  5'- -gCGCUCGcACCugccauugGCGCGauGCGCCauccgucGGCg -3'
miRNA:   3'- caGCGAGC-UGG--------CGCGCgcCGCGG-------CCG- -5'
24324 5' -64.7 NC_005263.2 + 32626 0.66 0.267597
Target:  5'- -aUGCUC-ACCGCGcCGCcGCaGCaCGGCa -3'
miRNA:   3'- caGCGAGcUGGCGC-GCGcCG-CG-GCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.