miRNA display CGI


Results 1 - 20 of 223 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24324 5' -64.7 NC_005263.2 + 44759 1.1 0.000098
Target:  5'- gGUCGCUCGACCGCGCGCGGCGCCGGCg -3'
miRNA:   3'- -CAGCGAGCUGGCGCGCGCCGCGGCCG- -5'
24324 5' -64.7 NC_005263.2 + 38335 0.81 0.019438
Target:  5'- -gCGCgcgCGACCGUGCacGCGGCGaCCGGCg -3'
miRNA:   3'- caGCGa--GCUGGCGCG--CGCCGC-GGCCG- -5'
24324 5' -64.7 NC_005263.2 + 9896 0.78 0.03299
Target:  5'- -aUGCUCGucguCgGCGCGCGGCGUCGGg -3'
miRNA:   3'- caGCGAGCu---GgCGCGCGCCGCGGCCg -5'
24324 5' -64.7 NC_005263.2 + 27685 0.78 0.033918
Target:  5'- -cCGCcuucUUGugCGCGC-CGGCGCCGGCg -3'
miRNA:   3'- caGCG----AGCugGCGCGcGCCGCGGCCG- -5'
24324 5' -64.7 NC_005263.2 + 14670 0.77 0.040045
Target:  5'- -gCGCUCGuggccgaccgcuACgCGCGCGCGGCGCUcaaGGCg -3'
miRNA:   3'- caGCGAGC------------UG-GCGCGCGCCGCGG---CCG- -5'
24324 5' -64.7 NC_005263.2 + 29184 0.77 0.043144
Target:  5'- -gCGCUCGugC-CGCGCGGUcacgcucgacgcagGCCGGCg -3'
miRNA:   3'- caGCGAGCugGcGCGCGCCG--------------CGGCCG- -5'
24324 5' -64.7 NC_005263.2 + 21188 0.76 0.044719
Target:  5'- -aCGCg-GA-CGCGCGCGGCGCgGGCg -3'
miRNA:   3'- caGCGagCUgGCGCGCGCCGCGgCCG- -5'
24324 5' -64.7 NC_005263.2 + 17488 0.76 0.049515
Target:  5'- -aCGCccUGAUCGCGCGCGGCGCgucgaucgaucaggCGGCg -3'
miRNA:   3'- caGCGa-GCUGGCGCGCGCCGCG--------------GCCG- -5'
24324 5' -64.7 NC_005263.2 + 21897 0.76 0.049925
Target:  5'- uUCGCgaaCGGCCGCcgcaucGCGCGGCcGCCGcGCg -3'
miRNA:   3'- cAGCGa--GCUGGCG------CGCGCCG-CGGC-CG- -5'
24324 5' -64.7 NC_005263.2 + 18944 0.76 0.049925
Target:  5'- -gCGCUCGAgCGCGC-CGGUucgagcgcaGCCGGCa -3'
miRNA:   3'- caGCGAGCUgGCGCGcGCCG---------CGGCCG- -5'
24324 5' -64.7 NC_005263.2 + 9525 0.76 0.049925
Target:  5'- aUCGUgCGGCCGUGCGCGGCaGCgaccgacgCGGCg -3'
miRNA:   3'- cAGCGaGCUGGCGCGCGCCG-CG--------GCCG- -5'
24324 5' -64.7 NC_005263.2 + 31243 0.76 0.049925
Target:  5'- -gCGCuUCGGuuCCGCgcgGCGCGGCGCCGGg -3'
miRNA:   3'- caGCG-AGCU--GGCG---CGCGCCGCGGCCg -5'
24324 5' -64.7 NC_005263.2 + 26197 0.76 0.049925
Target:  5'- -cCGCgcggCGGCCGCGCGauGCGgCGGCc -3'
miRNA:   3'- caGCGa---GCUGGCGCGCgcCGCgGCCG- -5'
24324 5' -64.7 NC_005263.2 + 8033 0.75 0.054211
Target:  5'- cUUGCgaggCGuCCGCGcCGUGGCGCCGcGCg -3'
miRNA:   3'- cAGCGa---GCuGGCGC-GCGCCGCGGC-CG- -5'
24324 5' -64.7 NC_005263.2 + 17808 0.74 0.063882
Target:  5'- -aCGC-CGGCCGCGCcCGGCGCUGucGCg -3'
miRNA:   3'- caGCGaGCUGGCGCGcGCCGCGGC--CG- -5'
24324 5' -64.7 NC_005263.2 + 35535 0.74 0.063882
Target:  5'- -gCGCcCGGCgGCGCGCGG-GCgGGCg -3'
miRNA:   3'- caGCGaGCUGgCGCGCGCCgCGgCCG- -5'
24324 5' -64.7 NC_005263.2 + 6599 0.74 0.065648
Target:  5'- aGUCGacgCGAUCGCGUucgGCGGCGCgcuCGGCg -3'
miRNA:   3'- -CAGCga-GCUGGCGCG---CGCCGCG---GCCG- -5'
24324 5' -64.7 NC_005263.2 + 20220 0.74 0.071233
Target:  5'- uUUGCcCGACUGCGCGC--CGCCGGCc -3'
miRNA:   3'- cAGCGaGCUGGCGCGCGccGCGGCCG- -5'
24324 5' -64.7 NC_005263.2 + 3300 0.74 0.073195
Target:  5'- cUC-CUUGugCGCGCgGCGGCGCgCGGUu -3'
miRNA:   3'- cAGcGAGCugGCGCG-CGCCGCG-GCCG- -5'
24324 5' -64.7 NC_005263.2 + 16362 0.74 0.075208
Target:  5'- -gCGCgCGGCCGCGuCGCucGGCGgCGGCc -3'
miRNA:   3'- caGCGaGCUGGCGC-GCG--CCGCgGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.