miRNA display CGI


Results 1 - 20 of 223 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24324 5' -64.7 NC_005263.2 + 47 0.69 0.170921
Target:  5'- -gCGUUCGAugggcCCGCuuGCGGCGCacgucaGGCa -3'
miRNA:   3'- caGCGAGCU-----GGCGcgCGCCGCGg-----CCG- -5'
24324 5' -64.7 NC_005263.2 + 85 0.67 0.236973
Target:  5'- aUCGCauagCGcCUGCcCGcCGGUGCCGGUa -3'
miRNA:   3'- cAGCGa---GCuGGCGcGC-GCCGCGGCCG- -5'
24324 5' -64.7 NC_005263.2 + 704 0.66 0.274093
Target:  5'- aUCGUgCcGCCGCcCGCGaGCGCCguGGCg -3'
miRNA:   3'- cAGCGaGcUGGCGcGCGC-CGCGG--CCG- -5'
24324 5' -64.7 NC_005263.2 + 785 0.7 0.135339
Target:  5'- --aGCccuUCGACCuugaGCGUGcCGGcCGCCGGCg -3'
miRNA:   3'- cagCG---AGCUGG----CGCGC-GCC-GCGGCCG- -5'
24324 5' -64.7 NC_005263.2 + 872 0.71 0.124091
Target:  5'- cGUCGUgcCGGCCGgcgcuucguucaGCGCGGCggucgccGCCGGCg -3'
miRNA:   3'- -CAGCGa-GCUGGCg-----------CGCGCCG-------CGGCCG- -5'
24324 5' -64.7 NC_005263.2 + 1042 0.67 0.242854
Target:  5'- uUCGauCUCGGCUuuCGUGCGGCGCUuGCg -3'
miRNA:   3'- cAGC--GAGCUGGc-GCGCGCCGCGGcCG- -5'
24324 5' -64.7 NC_005263.2 + 1116 0.72 0.103878
Target:  5'- aGUCGCgcgCGAaguCCGCGCcguGCuGCGCaCGGCg -3'
miRNA:   3'- -CAGCGa--GCU---GGCGCG---CGcCGCG-GCCG- -5'
24324 5' -64.7 NC_005263.2 + 1168 0.66 0.254979
Target:  5'- cGUCGCggCGACUugugccucguGCuGCGCGGCagcgcguucuuCCGGCg -3'
miRNA:   3'- -CAGCGa-GCUGG----------CG-CGCGCCGc----------GGCCG- -5'
24324 5' -64.7 NC_005263.2 + 1431 0.7 0.128415
Target:  5'- -cCGcCUUGGCUGCGCGCgaggcuucgcGGCGCucgCGGCg -3'
miRNA:   3'- caGC-GAGCUGGCGCGCG----------CCGCG---GCCG- -5'
24324 5' -64.7 NC_005263.2 + 1495 0.7 0.135339
Target:  5'- uUUGCUCGaACUGCGCGa-GCGaCGGCg -3'
miRNA:   3'- cAGCGAGC-UGGCGCGCgcCGCgGCCG- -5'
24324 5' -64.7 NC_005263.2 + 1928 0.7 0.142605
Target:  5'- cGUCuGCaCGAgCGCGC-CGGCaCCGGCg -3'
miRNA:   3'- -CAG-CGaGCUgGCGCGcGCCGcGGCCG- -5'
24324 5' -64.7 NC_005263.2 + 1990 0.7 0.135339
Target:  5'- uUUGCUCccgacuguccuaGGCCGCGCcaaauccgcaGCGGCGCauaaCGGCg -3'
miRNA:   3'- cAGCGAG------------CUGGCGCG----------CGCCGCG----GCCG- -5'
24324 5' -64.7 NC_005263.2 + 2262 0.71 0.112515
Target:  5'- aGUUGUUCGAgCGCaGCGCGuucgcCGUCGGCa -3'
miRNA:   3'- -CAGCGAGCUgGCG-CGCGCc----GCGGCCG- -5'
24324 5' -64.7 NC_005263.2 + 2355 0.7 0.138566
Target:  5'- cGUUGCgcagcuggaagUUGAUCGaCGCGgcguaacccaugaCGGCGCCGGCg -3'
miRNA:   3'- -CAGCG-----------AGCUGGC-GCGC-------------GCCGCGGCCG- -5'
24324 5' -64.7 NC_005263.2 + 2429 0.66 0.280047
Target:  5'- -cCGCUCGACgaguuguuucuggCGCaaCGCGGCcaGCuCGGCa -3'
miRNA:   3'- caGCGAGCUG-------------GCGc-GCGCCG--CG-GCCG- -5'
24324 5' -64.7 NC_005263.2 + 2620 0.7 0.128415
Target:  5'- -gCGCgacaGGCCGacCGCGCGGUucaucgcgcuuGCCGGCg -3'
miRNA:   3'- caGCGag--CUGGC--GCGCGCCG-----------CGGCCG- -5'
24324 5' -64.7 NC_005263.2 + 2694 0.68 0.198586
Target:  5'- aUCGCgCGGCCGCucggcaggugcauGCGCaGCGCgCGuGCa -3'
miRNA:   3'- cAGCGaGCUGGCG-------------CGCGcCGCG-GC-CG- -5'
24324 5' -64.7 NC_005263.2 + 3300 0.74 0.073195
Target:  5'- cUC-CUUGugCGCGCgGCGGCGCgCGGUu -3'
miRNA:   3'- cAGcGAGCugGCGCG-CGCCGCG-GCCG- -5'
24324 5' -64.7 NC_005263.2 + 3312 0.7 0.141493
Target:  5'- --gGCgCGGCCGCGCgguguucaacgucuGCGcGcCGCCGGCg -3'
miRNA:   3'- cagCGaGCUGGCGCG--------------CGC-C-GCGGCCG- -5'
24324 5' -64.7 NC_005263.2 + 3777 0.66 0.260596
Target:  5'- cGUCGCguucuggUCGGCCuuugcgaucuGCGagGCGaGCGCCGGa -3'
miRNA:   3'- -CAGCG-------AGCUGG----------CGCg-CGC-CGCGGCCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.