miRNA display CGI


Results 41 - 60 of 168 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24326 3' -55.2 NC_005263.2 + 45194 0.67 0.594104
Target:  5'- aCGGUUACgACGGC-CGCGCa-GCACg -3'
miRNA:   3'- aGUCGAUGgUGUUGcGUGCGgaCGUG- -5'
24326 3' -55.2 NC_005263.2 + 30866 0.67 0.594104
Target:  5'- gCGGCUggaacACCGCGA-GCAugacaccauuCGCCUGCAg -3'
miRNA:   3'- aGUCGA-----UGGUGUUgCGU----------GCGGACGUg -5'
24326 3' -55.2 NC_005263.2 + 13214 0.67 0.594104
Target:  5'- --cGC-GCCA-GGCGUgaGCGCCUGCGCg -3'
miRNA:   3'- aguCGaUGGUgUUGCG--UGCGGACGUG- -5'
24326 3' -55.2 NC_005263.2 + 36227 0.67 0.592982
Target:  5'- cCGGC-GCCGCGucgucagauAUGUucgacgaaaugaaGCGCCUGCGCg -3'
miRNA:   3'- aGUCGaUGGUGU---------UGCG-------------UGCGGACGUG- -5'
24326 3' -55.2 NC_005263.2 + 44151 0.67 0.582897
Target:  5'- aCGGcCUGCCAgGcuCGCugGCUgGCGCg -3'
miRNA:   3'- aGUC-GAUGGUgUu-GCGugCGGaCGUG- -5'
24326 3' -55.2 NC_005263.2 + 47375 0.67 0.582897
Target:  5'- gCGGCgcguuCGAUGCGCGCgaGCACa -3'
miRNA:   3'- aGUCGaugguGUUGCGUGCGgaCGUG- -5'
24326 3' -55.2 NC_005263.2 + 23384 0.67 0.582897
Target:  5'- -aGGCUGCCGCGAacauCGCGCGa-UGCGa -3'
miRNA:   3'- agUCGAUGGUGUU----GCGUGCggACGUg -5'
24326 3' -55.2 NC_005263.2 + 24972 0.67 0.582897
Target:  5'- aUCGGCaa-CACGAUGCugGCCgGCc- -3'
miRNA:   3'- -AGUCGaugGUGUUGCGugCGGaCGug -5'
24326 3' -55.2 NC_005263.2 + 27910 0.67 0.582897
Target:  5'- -aAGCacucgACgGCGGCGCGuCGCCcgGCGCg -3'
miRNA:   3'- agUCGa----UGgUGUUGCGU-GCGGa-CGUG- -5'
24326 3' -55.2 NC_005263.2 + 31247 0.67 0.582897
Target:  5'- uUCGGUU-CCGCGcgGCGCGgCGCCggGCAg -3'
miRNA:   3'- -AGUCGAuGGUGU--UGCGU-GCGGa-CGUg -5'
24326 3' -55.2 NC_005263.2 + 44762 0.67 0.582897
Target:  5'- --cGCUcgACCGC-GCGCgGCGCCggcgGCGCg -3'
miRNA:   3'- aguCGA--UGGUGuUGCG-UGCGGa---CGUG- -5'
24326 3' -55.2 NC_005263.2 + 7459 0.67 0.582897
Target:  5'- -aGGCUuccuGCUGC-ACGC-CGCUUGCGCg -3'
miRNA:   3'- agUCGA----UGGUGuUGCGuGCGGACGUG- -5'
24326 3' -55.2 NC_005263.2 + 18157 0.67 0.582897
Target:  5'- aCAGCUAUCggcgGCGGCGUugGCg-GCAUc -3'
miRNA:   3'- aGUCGAUGG----UGUUGCGugCGgaCGUG- -5'
24326 3' -55.2 NC_005263.2 + 16378 0.67 0.582897
Target:  5'- cUCGGCggcgGCCugAugaaGCugGCCgGCAUc -3'
miRNA:   3'- -AGUCGa---UGGugUug--CGugCGGaCGUG- -5'
24326 3' -55.2 NC_005263.2 + 17526 0.67 0.582897
Target:  5'- gCGGCUAUCACGGCaaACGgUgUGCGCg -3'
miRNA:   3'- aGUCGAUGGUGUUGcgUGC-GgACGUG- -5'
24326 3' -55.2 NC_005263.2 + 31505 0.67 0.582897
Target:  5'- -gAGCUGCUGCu-CGCGCGCgaGCcCg -3'
miRNA:   3'- agUCGAUGGUGuuGCGUGCGgaCGuG- -5'
24326 3' -55.2 NC_005263.2 + 3311 0.67 0.576194
Target:  5'- -gGGCgcgGCCGCGcgguguucaacgucuGCGCGcCGCCgGCGCc -3'
miRNA:   3'- agUCGa--UGGUGU---------------UGCGU-GCGGaCGUG- -5'
24326 3' -55.2 NC_005263.2 + 19036 0.67 0.571734
Target:  5'- aCGGCcgaugcgcGCCGCcccgagGACGCGCcgcgcgGCCUGCGCg -3'
miRNA:   3'- aGUCGa-------UGGUG------UUGCGUG------CGGACGUG- -5'
24326 3' -55.2 NC_005263.2 + 37250 0.67 0.571734
Target:  5'- -gAGUUccGCCGCGACGCcguaGCCcGCACc -3'
miRNA:   3'- agUCGA--UGGUGUUGCGug--CGGaCGUG- -5'
24326 3' -55.2 NC_005263.2 + 10701 0.67 0.560622
Target:  5'- aCGGCcGCgcgaCGCGAUGCACGUC-GCGCa -3'
miRNA:   3'- aGUCGaUG----GUGUUGCGUGCGGaCGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.