miRNA display CGI


Results 21 - 40 of 88 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24326 5' -56.7 NC_005263.2 + 27145 0.67 0.588178
Target:  5'- cCGGCuuucgugcccGCGAugGUGUCGuugaaCGUGGUCg -3'
miRNA:   3'- -GCCG----------CGCUugCACGGCua---GCGCUAGa -5'
24326 5' -56.7 NC_005263.2 + 39546 0.67 0.577367
Target:  5'- aGGCGacuGGACGacGCUGGUCGCGGcauUCa -3'
miRNA:   3'- gCCGCg--CUUGCa-CGGCUAGCGCU---AGa -5'
24326 5' -56.7 NC_005263.2 + 38339 0.67 0.566601
Target:  5'- uCGGUGCGAugGaugcgaaGUCGGUgcgcacCGCGAUCg -3'
miRNA:   3'- -GCCGCGCUugCa------CGGCUA------GCGCUAGa -5'
24326 5' -56.7 NC_005263.2 + 19678 0.67 0.566601
Target:  5'- cCGGUgaagcucaGCG-AUGUGCUGAaaGCGAUCUg -3'
miRNA:   3'- -GCCG--------CGCuUGCACGGCUagCGCUAGA- -5'
24326 5' -56.7 NC_005263.2 + 37827 0.67 0.545232
Target:  5'- cCGGCGCucAUGUcGCCGAcgcggcguuUCGCGAa-- -3'
miRNA:   3'- -GCCGCGcuUGCA-CGGCU---------AGCGCUaga -5'
24326 5' -56.7 NC_005263.2 + 30646 0.67 0.534644
Target:  5'- cCGGCGUuGACGU--CGAaCGCGAUCUg -3'
miRNA:   3'- -GCCGCGcUUGCAcgGCUaGCGCUAGA- -5'
24326 5' -56.7 NC_005263.2 + 16777 0.67 0.534644
Target:  5'- aCGGcCGCcGGCGUaucGCCGGaCGUGAUCg -3'
miRNA:   3'- -GCC-GCGcUUGCA---CGGCUaGCGCUAGa -5'
24326 5' -56.7 NC_005263.2 + 18753 0.67 0.577367
Target:  5'- uCGGCGCGAuCGUaGgCGG-CGCGGUg- -3'
miRNA:   3'- -GCCGCGCUuGCA-CgGCUaGCGCUAga -5'
24326 5' -56.7 NC_005263.2 + 26209 0.68 0.503346
Target:  5'- -cGCGCGAuGCGgcgGCCGuUCGCGAa-- -3'
miRNA:   3'- gcCGCGCU-UGCa--CGGCuAGCGCUaga -5'
24326 5' -56.7 NC_005263.2 + 41686 0.68 0.493089
Target:  5'- gGGCGCGGACugcgGCCGuaCGCGggCa -3'
miRNA:   3'- gCCGCGCUUGca--CGGCuaGCGCuaGa -5'
24326 5' -56.7 NC_005263.2 + 44999 0.68 0.482929
Target:  5'- aGGCGCGcAugGcGCCGuggcUCGCGAa-- -3'
miRNA:   3'- gCCGCGC-UugCaCGGCu---AGCGCUaga -5'
24326 5' -56.7 NC_005263.2 + 27967 0.68 0.482929
Target:  5'- cCGGCGCG-ACG-GCCGuaccGUCGCGcUUg -3'
miRNA:   3'- -GCCGCGCuUGCaCGGC----UAGCGCuAGa -5'
24326 5' -56.7 NC_005263.2 + 45332 0.68 0.512656
Target:  5'- cCGGuCGCGAGguCGUgaugccgGUCGGUCGCGAcuUCUg -3'
miRNA:   3'- -GCC-GCGCUU--GCA-------CGGCUAGCGCU--AGA- -5'
24326 5' -56.7 NC_005263.2 + 24548 0.68 0.503346
Target:  5'- gCGGCGCGGGCGgcggcgGCUGcgCcaCGGUCg -3'
miRNA:   3'- -GCCGCGCUUGCa-----CGGCuaGc-GCUAGa -5'
24326 5' -56.7 NC_005263.2 + 4604 0.68 0.472871
Target:  5'- aCGGcCGCGccggcagcuucGAgGUGCCGuaauugagcgccAUCGCGAUCa -3'
miRNA:   3'- -GCC-GCGC-----------UUgCACGGC------------UAGCGCUAGa -5'
24326 5' -56.7 NC_005263.2 + 10994 0.68 0.524129
Target:  5'- uGGCGCGAauGCGUGCgaaacccucCGucaugugUGCGAUCg -3'
miRNA:   3'- gCCGCGCU--UGCACG---------GCua-----GCGCUAGa -5'
24326 5' -56.7 NC_005263.2 + 19085 0.68 0.524129
Target:  5'- uGGUGCGucuuGCaGggcugGCCGAugucgaauugcUCGCGAUCUg -3'
miRNA:   3'- gCCGCGCu---UG-Ca----CGGCU-----------AGCGCUAGA- -5'
24326 5' -56.7 NC_005263.2 + 27376 0.68 0.513695
Target:  5'- gCGGCGCGGcgGCG-GCCGG-CGCGcugaccggcugcGUCa -3'
miRNA:   3'- -GCCGCGCU--UGCaCGGCUaGCGC------------UAGa -5'
24326 5' -56.7 NC_005263.2 + 28081 0.68 0.503346
Target:  5'- gCGGCaCGAucccguguguugGCGcgGCCGAUCGCG-UCg -3'
miRNA:   3'- -GCCGcGCU------------UGCa-CGGCUAGCGCuAGa -5'
24326 5' -56.7 NC_005263.2 + 33673 0.68 0.493089
Target:  5'- aGGCGCGcGCGcacGCCG-UCGCaugGGUCUg -3'
miRNA:   3'- gCCGCGCuUGCa--CGGCuAGCG---CUAGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.