Results 1 - 20 of 88 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24326 | 5' | -56.7 | NC_005263.2 | + | 25217 | 0.66 | 0.6426 |
Target: 5'- cCGGCaCGAAcgcCGUGCCGAUCcCGGc-- -3' miRNA: 3'- -GCCGcGCUU---GCACGGCUAGcGCUaga -5' |
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24326 | 5' | -56.7 | NC_005263.2 | + | 39307 | 0.66 | 0.620793 |
Target: 5'- aGGCGCauGCGcGCgCGAUCGCaGGUUg -3' miRNA: 3'- gCCGCGcuUGCaCG-GCUAGCG-CUAGa -5' |
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24326 | 5' | -56.7 | NC_005263.2 | + | 30215 | 0.66 | 0.620793 |
Target: 5'- uCGGCGCGcc---GCCGGUCGacuGAUCg -3' miRNA: 3'- -GCCGCGCuugcaCGGCUAGCg--CUAGa -5' |
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24326 | 5' | -56.7 | NC_005263.2 | + | 19096 | 0.66 | 0.609899 |
Target: 5'- gCGGUGCGcAACGcacUGCCGGUCggccgcgccgaGCGcAUCg -3' miRNA: 3'- -GCCGCGC-UUGC---ACGGCUAG-----------CGC-UAGa -5' |
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24326 | 5' | -56.7 | NC_005263.2 | + | 28088 | 0.66 | 0.620793 |
Target: 5'- gCGGUugauguaaGCGAucgACGUGUCGAUCGCa---- -3' miRNA: 3'- -GCCG--------CGCU---UGCACGGCUAGCGcuaga -5' |
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24326 | 5' | -56.7 | NC_005263.2 | + | 25079 | 0.66 | 0.620793 |
Target: 5'- aCGGUGCGGcCGagauaGUCGGUCauaccGCGAUCUg -3' miRNA: 3'- -GCCGCGCUuGCa----CGGCUAG-----CGCUAGA- -5' |
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24326 | 5' | -56.7 | NC_005263.2 | + | 27619 | 0.66 | 0.619703 |
Target: 5'- gCGGCGCGAcggucgaccacucAUG-GCCGAUCGaCGugacgaacGUCUc -3' miRNA: 3'- -GCCGCGCU-------------UGCaCGGCUAGC-GC--------UAGA- -5' |
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24326 | 5' | -56.7 | NC_005263.2 | + | 24942 | 0.66 | 0.620793 |
Target: 5'- uGGCgGCGGACGgcggUGCgCGGUuCGCaGAUCg -3' miRNA: 3'- gCCG-CGCUUGC----ACG-GCUA-GCG-CUAGa -5' |
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24326 | 5' | -56.7 | NC_005263.2 | + | 44896 | 0.66 | 0.625154 |
Target: 5'- uCGGgGCGGGCGgcgGCCGGgccggcucaccggccUCGUGcUCa -3' miRNA: 3'- -GCCgCGCUUGCa--CGGCU---------------AGCGCuAGa -5' |
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24326 | 5' | -56.7 | NC_005263.2 | + | 22103 | 0.66 | 0.63933 |
Target: 5'- aGGCGUGAcgGC-UGCCGccggcacgcugcaagCGCGAUCg -3' miRNA: 3'- gCCGCGCU--UGcACGGCua-------------GCGCUAGa -5' |
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24326 | 5' | -56.7 | NC_005263.2 | + | 10155 | 0.66 | 0.6426 |
Target: 5'- aGGCGgGcagcuuGGCGUcGCCGAgagCGCGaAUCg -3' miRNA: 3'- gCCGCgC------UUGCA-CGGCUa--GCGC-UAGa -5' |
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24326 | 5' | -56.7 | NC_005263.2 | + | 21733 | 0.66 | 0.6426 |
Target: 5'- uCGGCauGCGcGCGUGauaaGAUCGCGcgCa -3' miRNA: 3'- -GCCG--CGCuUGCACgg--CUAGCGCuaGa -5' |
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24326 | 5' | -56.7 | NC_005263.2 | + | 15771 | 0.66 | 0.6426 |
Target: 5'- uCGGCGUGuucaacaaaguGCGUcGCCcGUCGuCGAUCg -3' miRNA: 3'- -GCCGCGCu----------UGCA-CGGcUAGC-GCUAGa -5' |
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24326 | 5' | -56.7 | NC_005263.2 | + | 41483 | 0.67 | 0.555886 |
Target: 5'- uCGaCGCGGGCGagucgGCCG-UCGUGAUCc -3' miRNA: 3'- -GCcGCGCUUGCa----CGGCuAGCGCUAGa -5' |
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24326 | 5' | -56.7 | NC_005263.2 | + | 6619 | 0.67 | 0.555886 |
Target: 5'- gCGGCGCGcucGGCGcgGUCGAgcagUCGCGcGUCg -3' miRNA: 3'- -GCCGCGC---UUGCa-CGGCU----AGCGC-UAGa -5' |
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24326 | 5' | -56.7 | NC_005263.2 | + | 46439 | 0.67 | 0.534644 |
Target: 5'- gCGGCGCGcuacaaaaAGC-UGCCGGUCGaccaguucaCGAUCa -3' miRNA: 3'- -GCCGCGC--------UUGcACGGCUAGC---------GCUAGa -5' |
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24326 | 5' | -56.7 | NC_005263.2 | + | 16777 | 0.67 | 0.534644 |
Target: 5'- aCGGcCGCcGGCGUaucGCCGGaCGUGAUCg -3' miRNA: 3'- -GCC-GCGcUUGCA---CGGCUaGCGCUAGa -5' |
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24326 | 5' | -56.7 | NC_005263.2 | + | 30646 | 0.67 | 0.534644 |
Target: 5'- cCGGCGUuGACGU--CGAaCGCGAUCUg -3' miRNA: 3'- -GCCGCGcUUGCAcgGCUaGCGCUAGA- -5' |
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24326 | 5' | -56.7 | NC_005263.2 | + | 37827 | 0.67 | 0.545232 |
Target: 5'- cCGGCGCucAUGUcGCCGAcgcggcguuUCGCGAa-- -3' miRNA: 3'- -GCCGCGcuUGCA-CGGCU---------AGCGCUaga -5' |
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24326 | 5' | -56.7 | NC_005263.2 | + | 19678 | 0.67 | 0.566601 |
Target: 5'- cCGGUgaagcucaGCG-AUGUGCUGAaaGCGAUCUg -3' miRNA: 3'- -GCCG--------CGCuUGCACGGCUagCGCUAGA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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