miRNA display CGI


Results 1 - 20 of 88 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24326 5' -56.7 NC_005263.2 + 45470 1.08 0.000788
Target:  5'- cCGGCGCGAACGUGCCGAUCGCGAUCUa -3'
miRNA:   3'- -GCCGCGCUUGCACGGCUAGCGCUAGA- -5'
24326 5' -56.7 NC_005263.2 + 17102 0.8 0.091574
Target:  5'- gGGCGCccGCGUGuuGAUCGUGGUCg -3'
miRNA:   3'- gCCGCGcuUGCACggCUAGCGCUAGa -5'
24326 5' -56.7 NC_005263.2 + 22543 0.79 0.108399
Target:  5'- gCGGCGCGGAC--GCCGAcgucgcgcUCGCGAUCa -3'
miRNA:   3'- -GCCGCGCUUGcaCGGCU--------AGCGCUAGa -5'
24326 5' -56.7 NC_005263.2 + 38633 0.77 0.135362
Target:  5'- cCGGCGCGAAUGaaGCCGcGUCGCGcAUCg -3'
miRNA:   3'- -GCCGCGCUUGCa-CGGC-UAGCGC-UAGa -5'
24326 5' -56.7 NC_005263.2 + 7022 0.77 0.151049
Target:  5'- gCGGCGCGaAACGUGUCGAcgaUCGUGcgCg -3'
miRNA:   3'- -GCCGCGC-UUGCACGGCU---AGCGCuaGa -5'
24326 5' -56.7 NC_005263.2 + 31498 0.76 0.168371
Target:  5'- gCGGCGCGAGC-UGCUGcUCGCGcgCg -3'
miRNA:   3'- -GCCGCGCUUGcACGGCuAGCGCuaGa -5'
24326 5' -56.7 NC_005263.2 + 9223 0.75 0.192509
Target:  5'- aCGGCGCGcgguacguguccGACGUGUCGGUCGUccagagcuuGAUCUc -3'
miRNA:   3'- -GCCGCGC------------UUGCACGGCUAGCG---------CUAGA- -5'
24326 5' -56.7 NC_005263.2 + 6309 0.74 0.206769
Target:  5'- cCGGCGCGcccgguuugcaAACGUGCCGAUacgcuacccacaaaCGCGAUa- -3'
miRNA:   3'- -GCCGCGC-----------UUGCACGGCUA--------------GCGCUAga -5'
24326 5' -56.7 NC_005263.2 + 20693 0.74 0.208409
Target:  5'- gCGGCGCGAAaccUGcGCCGGUCGUGAc-- -3'
miRNA:   3'- -GCCGCGCUU---GCaCGGCUAGCGCUaga -5'
24326 5' -56.7 NC_005263.2 + 9582 0.74 0.214517
Target:  5'- aGGCGCu-GCGUGCCGucccauugcggcagCGCGAUCa -3'
miRNA:   3'- gCCGCGcuUGCACGGCua------------GCGCUAGa -5'
24326 5' -56.7 NC_005263.2 + 9231 0.74 0.225429
Target:  5'- uCGGCguucagcacgGCGAACGUGCCGAcCGUGAc-- -3'
miRNA:   3'- -GCCG----------CGCUUGCACGGCUaGCGCUaga -5'
24326 5' -56.7 NC_005263.2 + 24701 0.73 0.25251
Target:  5'- gCGGCGCgccGAACGUGCCGGgcggCGCaggcggcaauacgacGAUCa -3'
miRNA:   3'- -GCCGCG---CUUGCACGGCUa---GCG---------------CUAGa -5'
24326 5' -56.7 NC_005263.2 + 27507 0.73 0.256404
Target:  5'- aCGGCGUucACGaaGCCGGUCGCGGUg- -3'
miRNA:   3'- -GCCGCGcuUGCa-CGGCUAGCGCUAga -5'
24326 5' -56.7 NC_005263.2 + 14103 0.73 0.263003
Target:  5'- cCGGCuGCGcGGCGgucGCCG-UCGCGAUCg -3'
miRNA:   3'- -GCCG-CGC-UUGCa--CGGCuAGCGCUAGa -5'
24326 5' -56.7 NC_005263.2 + 29171 0.73 0.263003
Target:  5'- cCGGCGCGcucgagcgcuCGUGCCG--CGCGGUCa -3'
miRNA:   3'- -GCCGCGCuu--------GCACGGCuaGCGCUAGa -5'
24326 5' -56.7 NC_005263.2 + 29590 0.73 0.269738
Target:  5'- gCGGUGUcGACGccGCCGAUCGCGAg-- -3'
miRNA:   3'- -GCCGCGcUUGCa-CGGCUAGCGCUaga -5'
24326 5' -56.7 NC_005263.2 + 20362 0.73 0.276613
Target:  5'- gGGCGCGcAUG-GCUGAUCGCGcgCc -3'
miRNA:   3'- gCCGCGCuUGCaCGGCUAGCGCuaGa -5'
24326 5' -56.7 NC_005263.2 + 28636 0.72 0.290779
Target:  5'- uCGGCGUGAGCacguccUGCCaGAUucgCGCGAUCUg -3'
miRNA:   3'- -GCCGCGCUUGc-----ACGG-CUA---GCGCUAGA- -5'
24326 5' -56.7 NC_005263.2 + 47402 0.72 0.290779
Target:  5'- aCGGCgcucGCGGGCGgcgGCaCGAUCGCGcUCa -3'
miRNA:   3'- -GCCG----CGCUUGCa--CG-GCUAGCGCuAGa -5'
24326 5' -56.7 NC_005263.2 + 29234 0.72 0.291502
Target:  5'- uCGGCGCGcAGCGgcgcGCCGAggcacgcguuguucaCGCGGUCg -3'
miRNA:   3'- -GCCGCGC-UUGCa---CGGCUa--------------GCGCUAGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.