miRNA display CGI


Results 1 - 20 of 88 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24326 5' -56.7 NC_005263.2 + 45470 1.08 0.000788
Target:  5'- cCGGCGCGAACGUGCCGAUCGCGAUCUa -3'
miRNA:   3'- -GCCGCGCUUGCACGGCUAGCGCUAGA- -5'
24326 5' -56.7 NC_005263.2 + 2759 0.69 0.424263
Target:  5'- gCGGC-CGc-CGUGCCGGUCGUGuUCg -3'
miRNA:   3'- -GCCGcGCuuGCACGGCUAGCGCuAGa -5'
24326 5' -56.7 NC_005263.2 + 6183 0.69 0.430889
Target:  5'- gCGGCGC--GCGUuucgcauucaggaaGCCGGUCGCGuugGUCUu -3'
miRNA:   3'- -GCCGCGcuUGCA--------------CGGCUAGCGC---UAGA- -5'
24326 5' -56.7 NC_005263.2 + 25079 0.66 0.620793
Target:  5'- aCGGUGCGGcCGagauaGUCGGUCauaccGCGAUCUg -3'
miRNA:   3'- -GCCGCGCUuGCa----CGGCUAG-----CGCUAGA- -5'
24326 5' -56.7 NC_005263.2 + 20693 0.74 0.208409
Target:  5'- gCGGCGCGAAaccUGcGCCGGUCGUGAc-- -3'
miRNA:   3'- -GCCGCGCUU---GCaCGGCUAGCGCUaga -5'
24326 5' -56.7 NC_005263.2 + 9231 0.74 0.225429
Target:  5'- uCGGCguucagcacgGCGAACGUGCCGAcCGUGAc-- -3'
miRNA:   3'- -GCCG----------CGCUUGCACGGCUaGCGCUaga -5'
24326 5' -56.7 NC_005263.2 + 29171 0.73 0.263003
Target:  5'- cCGGCGCGcucgagcgcuCGUGCCG--CGCGGUCa -3'
miRNA:   3'- -GCCGCGCuu--------GCACGGCuaGCGCUAGa -5'
24326 5' -56.7 NC_005263.2 + 28636 0.72 0.290779
Target:  5'- uCGGCGUGAGCacguccUGCCaGAUucgCGCGAUCUg -3'
miRNA:   3'- -GCCGCGCUUGc-----ACGG-CUA---GCGCUAGA- -5'
24326 5' -56.7 NC_005263.2 + 3751 0.71 0.336662
Target:  5'- -aGCGCGuACGUGCCGuacaaugucgacGUCGCGuUCUg -3'
miRNA:   3'- gcCGCGCuUGCACGGC------------UAGCGCuAGA- -5'
24326 5' -56.7 NC_005263.2 + 10152 0.7 0.414903
Target:  5'- cCGGCGCGGcauCG-GCCGGUUGCGc--- -3'
miRNA:   3'- -GCCGCGCUu--GCaCGGCUAGCGCuaga -5'
24326 5' -56.7 NC_005263.2 + 37843 0.7 0.378767
Target:  5'- gCGGCGCGAuGCGaaGCgcAUCGCGAUCg -3'
miRNA:   3'- -GCCGCGCU-UGCa-CGgcUAGCGCUAGa -5'
24326 5' -56.7 NC_005263.2 + 29578 0.71 0.328661
Target:  5'- gCGGCGCGAgccgcuuugaucGCGU-CC-AUCGCGAUCc -3'
miRNA:   3'- -GCCGCGCU------------UGCAcGGcUAGCGCUAGa -5'
24326 5' -56.7 NC_005263.2 + 17102 0.8 0.091574
Target:  5'- gGGCGCccGCGUGuuGAUCGUGGUCg -3'
miRNA:   3'- gCCGCGcuUGCACggCUAGCGCUAGa -5'
24326 5' -56.7 NC_005263.2 + 20996 0.7 0.387601
Target:  5'- -uGCGCGucGACGUGCCGGcguuUCagGCGAUCa -3'
miRNA:   3'- gcCGCGC--UUGCACGGCU----AG--CGCUAGa -5'
24326 5' -56.7 NC_005263.2 + 31498 0.76 0.168371
Target:  5'- gCGGCGCGAGC-UGCUGcUCGCGcgCg -3'
miRNA:   3'- -GCCGCGCUUGcACGGCuAGCGCuaGa -5'
24326 5' -56.7 NC_005263.2 + 29234 0.72 0.291502
Target:  5'- uCGGCGCGcAGCGgcgcGCCGAggcacgcguuguucaCGCGGUCg -3'
miRNA:   3'- -GCCGCGC-UUGCa---CGGCUa--------------GCGCUAGa -5'
24326 5' -56.7 NC_005263.2 + 33899 0.7 0.405672
Target:  5'- uGcGCGCGAACGgcacGCCG-UCGCGGa-- -3'
miRNA:   3'- gC-CGCGCUUGCa---CGGCuAGCGCUaga -5'
24326 5' -56.7 NC_005263.2 + 9720 0.69 0.428042
Target:  5'- gCGGCGCGcuugcGCucguucgccacagcaGUGUCGAUCGCGGUg- -3'
miRNA:   3'- -GCCGCGCu----UG---------------CACGGCUAGCGCUAga -5'
24326 5' -56.7 NC_005263.2 + 6309 0.74 0.206769
Target:  5'- cCGGCGCGcccgguuugcaAACGUGCCGAUacgcuacccacaaaCGCGAUa- -3'
miRNA:   3'- -GCCGCGC-----------UUGCACGGCUA--------------GCGCUAga -5'
24326 5' -56.7 NC_005263.2 + 14103 0.73 0.263003
Target:  5'- cCGGCuGCGcGGCGgucGCCG-UCGCGAUCg -3'
miRNA:   3'- -GCCG-CGC-UUGCa--CGGCuAGCGCUAGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.