miRNA display CGI


Results 1 - 20 of 88 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24326 5' -56.7 NC_005263.2 + 696 0.67 0.534644
Target:  5'- uGaGCGCGAuCGUGCCGccgccCGCGAg-- -3'
miRNA:   3'- gC-CGCGCUuGCACGGCua---GCGCUaga -5'
24326 5' -56.7 NC_005263.2 + 1583 0.7 0.39657
Target:  5'- aCGGCacGCuuGGACGUGCCGAgcagCGCGGc-- -3'
miRNA:   3'- -GCCG--CG--CUUGCACGGCUa---GCGCUaga -5'
24326 5' -56.7 NC_005263.2 + 2759 0.69 0.424263
Target:  5'- gCGGC-CGc-CGUGCCGGUCGUGuUCg -3'
miRNA:   3'- -GCCGcGCuuGCACGGCUAGCGCuAGa -5'
24326 5' -56.7 NC_005263.2 + 3311 0.71 0.353922
Target:  5'- gGGCGCGGccgcgcgguguucaACGUcugcgcgccgccggcGCCGcgCGCGGUCg -3'
miRNA:   3'- gCCGCGCU--------------UGCA---------------CGGCuaGCGCUAGa -5'
24326 5' -56.7 NC_005263.2 + 3751 0.71 0.336662
Target:  5'- -aGCGCGuACGUGCCGuacaaugucgacGUCGCGuUCUg -3'
miRNA:   3'- gcCGCGCuUGCACGGC------------UAGCGCuAGA- -5'
24326 5' -56.7 NC_005263.2 + 4604 0.68 0.472871
Target:  5'- aCGGcCGCGccggcagcuucGAgGUGCCGuaauugagcgccAUCGCGAUCa -3'
miRNA:   3'- -GCC-GCGC-----------UUgCACGGC------------UAGCGCUAGa -5'
24326 5' -56.7 NC_005263.2 + 6183 0.69 0.430889
Target:  5'- gCGGCGC--GCGUuucgcauucaggaaGCCGGUCGCGuugGUCUu -3'
miRNA:   3'- -GCCGCGcuUGCA--------------CGGCUAGCGC---UAGA- -5'
24326 5' -56.7 NC_005263.2 + 6254 0.69 0.433748
Target:  5'- aGGCGCGGuCGUGCCG-UCGgGcagCUu -3'
miRNA:   3'- gCCGCGCUuGCACGGCuAGCgCua-GA- -5'
24326 5' -56.7 NC_005263.2 + 6309 0.74 0.206769
Target:  5'- cCGGCGCGcccgguuugcaAACGUGCCGAUacgcuacccacaaaCGCGAUa- -3'
miRNA:   3'- -GCCGCGC-----------UUGCACGGCUA--------------GCGCUAga -5'
24326 5' -56.7 NC_005263.2 + 6508 0.7 0.370069
Target:  5'- aCGGCGCGuugaaGCCGGUCGUGAg-- -3'
miRNA:   3'- -GCCGCGCuugcaCGGCUAGCGCUaga -5'
24326 5' -56.7 NC_005263.2 + 6619 0.67 0.555886
Target:  5'- gCGGCGCGcucGGCGcgGUCGAgcagUCGCGcGUCg -3'
miRNA:   3'- -GCCGCGC---UUGCa-CGGCU----AGCGC-UAGa -5'
24326 5' -56.7 NC_005263.2 + 7022 0.77 0.151049
Target:  5'- gCGGCGCGaAACGUGUCGAcgaUCGUGcgCg -3'
miRNA:   3'- -GCCGCGC-UUGCACGGCU---AGCGCuaGa -5'
24326 5' -56.7 NC_005263.2 + 8286 0.71 0.361508
Target:  5'- -aGCGCGAGCGgcGUCGGUCG-GAUCg -3'
miRNA:   3'- gcCGCGCUUGCa-CGGCUAGCgCUAGa -5'
24326 5' -56.7 NC_005263.2 + 9223 0.75 0.192509
Target:  5'- aCGGCGCGcgguacguguccGACGUGUCGGUCGUccagagcuuGAUCUc -3'
miRNA:   3'- -GCCGCGC------------UUGCACGGCUAGCG---------CUAGA- -5'
24326 5' -56.7 NC_005263.2 + 9231 0.74 0.225429
Target:  5'- uCGGCguucagcacgGCGAACGUGCCGAcCGUGAc-- -3'
miRNA:   3'- -GCCG----------CGCUUGCACGGCUaGCGCUaga -5'
24326 5' -56.7 NC_005263.2 + 9582 0.74 0.214517
Target:  5'- aGGCGCu-GCGUGCCGucccauugcggcagCGCGAUCa -3'
miRNA:   3'- gCCGCGcuUGCACGGCua------------GCGCUAGa -5'
24326 5' -56.7 NC_005263.2 + 9720 0.69 0.428042
Target:  5'- gCGGCGCGcuugcGCucguucgccacagcaGUGUCGAUCGCGGUg- -3'
miRNA:   3'- -GCCGCGCu----UG---------------CACGGCUAGCGCUAga -5'
24326 5' -56.7 NC_005263.2 + 9768 0.7 0.39657
Target:  5'- cCGGuCGCc-GCGUGCaCGGUCGCGcgCg -3'
miRNA:   3'- -GCC-GCGcuUGCACG-GCUAGCGCuaGa -5'
24326 5' -56.7 NC_005263.2 + 10152 0.7 0.414903
Target:  5'- cCGGCGCGGcauCG-GCCGGUUGCGc--- -3'
miRNA:   3'- -GCCGCGCUu--GCaCGGCUAGCGCuaga -5'
24326 5' -56.7 NC_005263.2 + 10155 0.66 0.6426
Target:  5'- aGGCGgGcagcuuGGCGUcGCCGAgagCGCGaAUCg -3'
miRNA:   3'- gCCGCgC------UUGCA-CGGCUa--GCGC-UAGa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.