miRNA display CGI


Results 21 - 40 of 88 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24326 5' -56.7 NC_005263.2 + 10994 0.68 0.524129
Target:  5'- uGGCGCGAauGCGUGCgaaacccucCGucaugugUGCGAUCg -3'
miRNA:   3'- gCCGCGCU--UGCACG---------GCua-----GCGCUAGa -5'
24326 5' -56.7 NC_005263.2 + 11820 0.68 0.472871
Target:  5'- uCGcGCGCGAACGUGUCGAaguagCGCu---- -3'
miRNA:   3'- -GC-CGCGCUUGCACGGCUa----GCGcuaga -5'
24326 5' -56.7 NC_005263.2 + 13623 0.69 0.46292
Target:  5'- gGGUGCGcGCG-GCCGAaCGCcuGAUCa -3'
miRNA:   3'- gCCGCGCuUGCaCGGCUaGCG--CUAGa -5'
24326 5' -56.7 NC_005263.2 + 14103 0.73 0.263003
Target:  5'- cCGGCuGCGcGGCGgucGCCG-UCGCGAUCg -3'
miRNA:   3'- -GCCG-CGC-UUGCa--CGGCuAGCGCUAGa -5'
24326 5' -56.7 NC_005263.2 + 14193 0.7 0.387601
Target:  5'- gGGCagcaagcguuccGCGAcgGCGUGCCGuUCGCGcgCa -3'
miRNA:   3'- gCCG------------CGCU--UGCACGGCuAGCGCuaGa -5'
24326 5' -56.7 NC_005263.2 + 15771 0.66 0.6426
Target:  5'- uCGGCGUGuucaacaaaguGCGUcGCCcGUCGuCGAUCg -3'
miRNA:   3'- -GCCGCGCu----------UGCA-CGGcUAGC-GCUAGa -5'
24326 5' -56.7 NC_005263.2 + 16583 0.69 0.46292
Target:  5'- cCGGCgGCGAcGCGUucGCCGGgcUCGCGcgCg -3'
miRNA:   3'- -GCCG-CGCU-UGCA--CGGCU--AGCGCuaGa -5'
24326 5' -56.7 NC_005263.2 + 16777 0.67 0.534644
Target:  5'- aCGGcCGCcGGCGUaucGCCGGaCGUGAUCg -3'
miRNA:   3'- -GCC-GCGcUUGCA---CGGCUaGCGCUAGa -5'
24326 5' -56.7 NC_005263.2 + 17102 0.8 0.091574
Target:  5'- gGGCGCccGCGUGuuGAUCGUGGUCg -3'
miRNA:   3'- gCCGCGcuUGCACggCUAGCGCUAGa -5'
24326 5' -56.7 NC_005263.2 + 18753 0.67 0.577367
Target:  5'- uCGGCGCGAuCGUaGgCGG-CGCGGUg- -3'
miRNA:   3'- -GCCGCGCUuGCA-CgGCUaGCGCUAga -5'
24326 5' -56.7 NC_005263.2 + 19085 0.68 0.524129
Target:  5'- uGGUGCGucuuGCaGggcugGCCGAugucgaauugcUCGCGAUCUg -3'
miRNA:   3'- gCCGCGCu---UG-Ca----CGGCU-----------AGCGCUAGA- -5'
24326 5' -56.7 NC_005263.2 + 19096 0.66 0.609899
Target:  5'- gCGGUGCGcAACGcacUGCCGGUCggccgcgccgaGCGcAUCg -3'
miRNA:   3'- -GCCGCGC-UUGC---ACGGCUAG-----------CGC-UAGa -5'
24326 5' -56.7 NC_005263.2 + 19174 0.67 0.588178
Target:  5'- cCGGCGCGGcuCGUcgGCCGcgCGUGGg-- -3'
miRNA:   3'- -GCCGCGCUu-GCA--CGGCuaGCGCUaga -5'
24326 5' -56.7 NC_005263.2 + 19678 0.67 0.566601
Target:  5'- cCGGUgaagcucaGCG-AUGUGCUGAaaGCGAUCUg -3'
miRNA:   3'- -GCCG--------CGCuUGCACGGCUagCGCUAGA- -5'
24326 5' -56.7 NC_005263.2 + 20271 0.7 0.392069
Target:  5'- gCGGCGcCGAauucaacGCGUGCCGcgaaggugacgcCGCGAUCa -3'
miRNA:   3'- -GCCGC-GCU-------UGCACGGCua----------GCGCUAGa -5'
24326 5' -56.7 NC_005263.2 + 20362 0.73 0.276613
Target:  5'- gGGCGCGcAUG-GCUGAUCGCGcgCc -3'
miRNA:   3'- gCCGCGCuUGCaCGGCUAGCGCuaGa -5'
24326 5' -56.7 NC_005263.2 + 20693 0.74 0.208409
Target:  5'- gCGGCGCGAAaccUGcGCCGGUCGUGAc-- -3'
miRNA:   3'- -GCCGCGCUU---GCaCGGCUAGCGCUaga -5'
24326 5' -56.7 NC_005263.2 + 20996 0.7 0.387601
Target:  5'- -uGCGCGucGACGUGCCGGcguuUCagGCGAUCa -3'
miRNA:   3'- gcCGCGC--UUGCACGGCU----AG--CGCUAGa -5'
24326 5' -56.7 NC_005263.2 + 21184 0.67 0.588178
Target:  5'- cCGGaCGCGGACGcGCgCGG-CGCGggCg -3'
miRNA:   3'- -GCC-GCGCUUGCaCG-GCUaGCGCuaGa -5'
24326 5' -56.7 NC_005263.2 + 21733 0.66 0.6426
Target:  5'- uCGGCauGCGcGCGUGauaaGAUCGCGcgCa -3'
miRNA:   3'- -GCCG--CGCuUGCACgg--CUAGCGCuaGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.