miRNA display CGI


Results 21 - 40 of 88 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24326 5' -56.7 NC_005263.2 + 4604 0.68 0.472871
Target:  5'- aCGGcCGCGccggcagcuucGAgGUGCCGuaauugagcgccAUCGCGAUCa -3'
miRNA:   3'- -GCC-GCGC-----------UUgCACGGC------------UAGCGCUAGa -5'
24326 5' -56.7 NC_005263.2 + 6183 0.69 0.430889
Target:  5'- gCGGCGC--GCGUuucgcauucaggaaGCCGGUCGCGuugGUCUu -3'
miRNA:   3'- -GCCGCGcuUGCA--------------CGGCUAGCGC---UAGA- -5'
24326 5' -56.7 NC_005263.2 + 29578 0.71 0.328661
Target:  5'- gCGGCGCGAgccgcuuugaucGCGU-CC-AUCGCGAUCc -3'
miRNA:   3'- -GCCGCGCU------------UGCAcGGcUAGCGCUAGa -5'
24326 5' -56.7 NC_005263.2 + 6309 0.74 0.206769
Target:  5'- cCGGCGCGcccgguuugcaAACGUGCCGAUacgcuacccacaaaCGCGAUa- -3'
miRNA:   3'- -GCCGCGC-----------UUGCACGGCUA--------------GCGCUAga -5'
24326 5' -56.7 NC_005263.2 + 28045 0.67 0.588178
Target:  5'- uCGGCuCGAGCGUGUgcugaaCGAccgcCGCGAUCc -3'
miRNA:   3'- -GCCGcGCUUGCACG------GCUa---GCGCUAGa -5'
24326 5' -56.7 NC_005263.2 + 45332 0.68 0.512656
Target:  5'- cCGGuCGCGAGguCGUgaugccgGUCGGUCGCGAcuUCUg -3'
miRNA:   3'- -GCC-GCGCUU--GCA-------CGGCUAGCGCU--AGA- -5'
24326 5' -56.7 NC_005263.2 + 2759 0.69 0.424263
Target:  5'- gCGGC-CGc-CGUGCCGGUCGUGuUCg -3'
miRNA:   3'- -GCCGcGCuuGCACGGCUAGCGCuAGa -5'
24326 5' -56.7 NC_005263.2 + 31498 0.76 0.168371
Target:  5'- gCGGCGCGAGC-UGCUGcUCGCGcgCg -3'
miRNA:   3'- -GCCGCGCUUGcACGGCuAGCGCuaGa -5'
24326 5' -56.7 NC_005263.2 + 41686 0.68 0.493089
Target:  5'- gGGCGCGGACugcgGCCGuaCGCGggCa -3'
miRNA:   3'- gCCGCGCUUGca--CGGCuaGCGCuaGa -5'
24326 5' -56.7 NC_005263.2 + 17102 0.8 0.091574
Target:  5'- gGGCGCccGCGUGuuGAUCGUGGUCg -3'
miRNA:   3'- gCCGCGcuUGCACggCUAGCGCUAGa -5'
24326 5' -56.7 NC_005263.2 + 9720 0.69 0.428042
Target:  5'- gCGGCGCGcuugcGCucguucgccacagcaGUGUCGAUCGCGGUg- -3'
miRNA:   3'- -GCCGCGCu----UG---------------CACGGCUAGCGCUAga -5'
24326 5' -56.7 NC_005263.2 + 11820 0.68 0.472871
Target:  5'- uCGcGCGCGAACGUGUCGAaguagCGCu---- -3'
miRNA:   3'- -GC-CGCGCUUGCACGGCUa----GCGcuaga -5'
24326 5' -56.7 NC_005263.2 + 20996 0.7 0.387601
Target:  5'- -uGCGCGucGACGUGCCGGcguuUCagGCGAUCa -3'
miRNA:   3'- gcCGCGC--UUGCACGGCU----AG--CGCUAGa -5'
24326 5' -56.7 NC_005263.2 + 3751 0.71 0.336662
Target:  5'- -aGCGCGuACGUGCCGuacaaugucgacGUCGCGuUCUg -3'
miRNA:   3'- gcCGCGCuUGCACGGC------------UAGCGCuAGA- -5'
24326 5' -56.7 NC_005263.2 + 29171 0.73 0.263003
Target:  5'- cCGGCGCGcucgagcgcuCGUGCCG--CGCGGUCa -3'
miRNA:   3'- -GCCGCGCuu--------GCACGGCuaGCGCUAGa -5'
24326 5' -56.7 NC_005263.2 + 20693 0.74 0.208409
Target:  5'- gCGGCGCGAAaccUGcGCCGGUCGUGAc-- -3'
miRNA:   3'- -GCCGCGCUU---GCaCGGCUAGCGCUaga -5'
24326 5' -56.7 NC_005263.2 + 30215 0.66 0.620793
Target:  5'- uCGGCGCGcc---GCCGGUCGacuGAUCg -3'
miRNA:   3'- -GCCGCGCuugcaCGGCUAGCg--CUAGa -5'
24326 5' -56.7 NC_005263.2 + 19174 0.67 0.588178
Target:  5'- cCGGCGCGGcuCGUcgGCCGcgCGUGGg-- -3'
miRNA:   3'- -GCCGCGCUu-GCA--CGGCuaGCGCUaga -5'
24326 5' -56.7 NC_005263.2 + 41483 0.67 0.555886
Target:  5'- uCGaCGCGGGCGagucgGCCG-UCGUGAUCc -3'
miRNA:   3'- -GCcGCGCUUGCa----CGGCuAGCGCUAGa -5'
24326 5' -56.7 NC_005263.2 + 46439 0.67 0.534644
Target:  5'- gCGGCGCGcuacaaaaAGC-UGCCGGUCGaccaguucaCGAUCa -3'
miRNA:   3'- -GCCGCGC--------UUGcACGGCUAGC---------GCUAGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.