Results 21 - 40 of 120 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24327 | 3' | -55.5 | NC_005263.2 | + | 14176 | 0.69 | 0.523245 |
Target: 5'- gCGGCCGguGUGCgCGAGCU-GCGuGCGCu -3' miRNA: 3'- gGCUGGU--UAUG-GCUUGAcCGC-CGCGc -5' |
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24327 | 3' | -55.5 | NC_005263.2 | + | 20736 | 0.7 | 0.471817 |
Target: 5'- gCCGGCCGccGCCGcgccgcucGCUGGCGGCc-- -3' miRNA: 3'- -GGCUGGUuaUGGCu-------UGACCGCCGcgc -5' |
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24327 | 3' | -55.5 | NC_005263.2 | + | 9546 | 0.71 | 0.395314 |
Target: 5'- gCGACCGAcGCgGcGCUcgcggcuugccaGGCGGCGCGc -3' miRNA: 3'- gGCUGGUUaUGgCuUGA------------CCGCCGCGC- -5' |
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24327 | 3' | -55.5 | NC_005263.2 | + | 19743 | 0.78 | 0.15398 |
Target: 5'- gCGAUCGGcGCUGGcgcGCUGGCGGCGCu -3' miRNA: 3'- gGCUGGUUaUGGCU---UGACCGCCGCGc -5' |
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24327 | 3' | -55.5 | NC_005263.2 | + | 20671 | 0.68 | 0.587537 |
Target: 5'- gCGGCCG---UCGAaaGCguguucGGCGGCGCGa -3' miRNA: 3'- gGCUGGUuauGGCU--UGa-----CCGCCGCGC- -5' |
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24327 | 3' | -55.5 | NC_005263.2 | + | 39349 | 0.68 | 0.555119 |
Target: 5'- gCUGGCa---GCCGAuucGCUcggcGGCGGCGCGc -3' miRNA: 3'- -GGCUGguuaUGGCU---UGA----CCGCCGCGC- -5' |
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24327 | 3' | -55.5 | NC_005263.2 | + | 40006 | 0.7 | 0.461835 |
Target: 5'- cCCGACUAAUGagGuGCUGGCguuuuugacuGGCGCGu -3' miRNA: 3'- -GGCUGGUUAUggCuUGACCG----------CCGCGC- -5' |
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24327 | 3' | -55.5 | NC_005263.2 | + | 10162 | 0.79 | 0.134189 |
Target: 5'- aUCGGCCGGUugcgcACCGGcuGCcGGCGGCGCGc -3' miRNA: 3'- -GGCUGGUUA-----UGGCU--UGaCCGCCGCGC- -5' |
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24327 | 3' | -55.5 | NC_005263.2 | + | 30762 | 0.68 | 0.550833 |
Target: 5'- gUCGACCGcgAUGCCGAACgucgaagccacCGGCGCc -3' miRNA: 3'- -GGCUGGU--UAUGGCUUGacc--------GCCGCGc -5' |
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24327 | 3' | -55.5 | NC_005263.2 | + | 39022 | 0.81 | 0.090353 |
Target: 5'- aCCGGCCGAUcgacCCGAACUGGCacgucgaGGCGCu -3' miRNA: 3'- -GGCUGGUUAu---GGCUUGACCG-------CCGCGc -5' |
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24327 | 3' | -55.5 | NC_005263.2 | + | 36100 | 0.7 | 0.462828 |
Target: 5'- aCCGuCCGAUACgaCGAGCUGGCccguaacacgacgcuGCGCGc -3' miRNA: 3'- -GGCuGGUUAUG--GCUUGACCGc--------------CGCGC- -5' |
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24327 | 3' | -55.5 | NC_005263.2 | + | 31544 | 0.69 | 0.523245 |
Target: 5'- gCCGGCCu-UGgCGucGCUgcccaGGCGGCGCGc -3' miRNA: 3'- -GGCUGGuuAUgGCu-UGA-----CCGCCGCGC- -5' |
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24327 | 3' | -55.5 | NC_005263.2 | + | 43863 | 0.7 | 0.432581 |
Target: 5'- aCCGACCug-ACCGAGCacgGGCuaGGcCGCu -3' miRNA: 3'- -GGCUGGuuaUGGCUUGa--CCG--CC-GCGc -5' |
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24327 | 3' | -55.5 | NC_005263.2 | + | 22494 | 0.71 | 0.413689 |
Target: 5'- gCCGGCgGcgGCCGGcgGCgguucGGCGGCuGCGg -3' miRNA: 3'- -GGCUGgUuaUGGCU--UGa----CCGCCG-CGC- -5' |
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24327 | 3' | -55.5 | NC_005263.2 | + | 39677 | 0.72 | 0.342634 |
Target: 5'- gCCGACUGcUGCCGGacgcgaACUucacggucgccgaGGCGGCGCGc -3' miRNA: 3'- -GGCUGGUuAUGGCU------UGA-------------CCGCCGCGC- -5' |
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24327 | 3' | -55.5 | NC_005263.2 | + | 15469 | 0.75 | 0.229974 |
Target: 5'- gCGACgAuuUGCCGuGCUgcGGCGGCGCGg -3' miRNA: 3'- gGCUGgUu-AUGGCuUGA--CCGCCGCGC- -5' |
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24327 | 3' | -55.5 | NC_005263.2 | + | 26309 | 0.68 | 0.598427 |
Target: 5'- gCCGGCCA--GCUGcaGGCcGGuCGGCGUGa -3' miRNA: 3'- -GGCUGGUuaUGGC--UUGaCC-GCCGCGC- -5' |
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24327 | 3' | -55.5 | NC_005263.2 | + | 45654 | 0.68 | 0.587537 |
Target: 5'- -gGugCu-UGCCGAGCUGGCcGCGUu -3' miRNA: 3'- ggCugGuuAUGGCUUGACCGcCGCGc -5' |
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24327 | 3' | -55.5 | NC_005263.2 | + | 21181 | 0.68 | 0.576683 |
Target: 5'- -gGGCCGG-ACgCGGACgcgcGCGGCGCGg -3' miRNA: 3'- ggCUGGUUaUG-GCUUGac--CGCCGCGC- -5' |
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24327 | 3' | -55.5 | NC_005263.2 | + | 33998 | 0.68 | 0.555119 |
Target: 5'- gCCGGCC-GUGuuG-GCUGcgucGCGGCGCGc -3' miRNA: 3'- -GGCUGGuUAUggCuUGAC----CGCCGCGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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