miRNA display CGI


Results 1 - 20 of 120 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24327 3' -55.5 NC_005263.2 + 46420 1.1 0.000787
Target:  5'- aCCGACCAAUACCGAACUGGCGGCGCGc -3'
miRNA:   3'- -GGCUGGUUAUGGCUUGACCGCCGCGC- -5'
24327 3' -55.5 NC_005263.2 + 40006 0.7 0.461835
Target:  5'- cCCGACUAAUGagGuGCUGGCguuuuugacuGGCGCGu -3'
miRNA:   3'- -GGCUGGUUAUggCuUGACCG----------CCGCGC- -5'
24327 3' -55.5 NC_005263.2 + 20736 0.7 0.471817
Target:  5'- gCCGGCCGccGCCGcgccgcucGCUGGCGGCc-- -3'
miRNA:   3'- -GGCUGGUuaUGGCu-------UGACCGCCGcgc -5'
24327 3' -55.5 NC_005263.2 + 29216 0.66 0.717998
Target:  5'- gCCGGCgCGuauuUGCCGucggcGCgcaGCGGCGCGc -3'
miRNA:   3'- -GGCUG-GUu---AUGGCu----UGac-CGCCGCGC- -5'
24327 3' -55.5 NC_005263.2 + 15469 0.75 0.229974
Target:  5'- gCGACgAuuUGCCGuGCUgcGGCGGCGCGg -3'
miRNA:   3'- gGCUGgUu-AUGGCuUGA--CCGCCGCGC- -5'
24327 3' -55.5 NC_005263.2 + 45827 0.75 0.244733
Target:  5'- aUGACCGAUuugaccgcaaccuugGCCGAGC-GcGCGGCGCGc -3'
miRNA:   3'- gGCUGGUUA---------------UGGCUUGaC-CGCCGCGC- -5'
24327 3' -55.5 NC_005263.2 + 39677 0.72 0.342634
Target:  5'- gCCGACUGcUGCCGGacgcgaACUucacggucgccgaGGCGGCGCGc -3'
miRNA:   3'- -GGCUGGUuAUGGCU------UGA-------------CCGCCGCGC- -5'
24327 3' -55.5 NC_005263.2 + 14842 0.72 0.35175
Target:  5'- gCCGACCAccagaAUucGCUGAugUuGCGGCGCa -3'
miRNA:   3'- -GGCUGGU-----UA--UGGCUugAcCGCCGCGc -5'
24327 3' -55.5 NC_005263.2 + 22494 0.71 0.413689
Target:  5'- gCCGGCgGcgGCCGGcgGCgguucGGCGGCuGCGg -3'
miRNA:   3'- -GGCUGgUuaUGGCU--UGa----CCGCCG-CGC- -5'
24327 3' -55.5 NC_005263.2 + 13275 0.7 0.442214
Target:  5'- aCGAuguCCGAcACCG-ACUGGCGcGUGCGc -3'
miRNA:   3'- gGCU---GGUUaUGGCuUGACCGC-CGCGC- -5'
24327 3' -55.5 NC_005263.2 + 44764 0.71 0.423072
Target:  5'- cUCGACCGcgcGCgGcGCcGGCGGCGCGc -3'
miRNA:   3'- -GGCUGGUua-UGgCuUGaCCGCCGCGC- -5'
24327 3' -55.5 NC_005263.2 + 9546 0.71 0.395314
Target:  5'- gCGACCGAcGCgGcGCUcgcggcuugccaGGCGGCGCGc -3'
miRNA:   3'- gGCUGGUUaUGgCuUGA------------CCGCCGCGC- -5'
24327 3' -55.5 NC_005263.2 + 39022 0.81 0.090353
Target:  5'- aCCGGCCGAUcgacCCGAACUGGCacgucgaGGCGCu -3'
miRNA:   3'- -GGCUGGUUAu---GGCUUGACCG-------CCGCGc -5'
24327 3' -55.5 NC_005263.2 + 43863 0.7 0.432581
Target:  5'- aCCGACCug-ACCGAGCacgGGCuaGGcCGCu -3'
miRNA:   3'- -GGCUGGuuaUGGCUUGa--CCG--CC-GCGc -5'
24327 3' -55.5 NC_005263.2 + 10162 0.79 0.134189
Target:  5'- aUCGGCCGGUugcgcACCGGcuGCcGGCGGCGCGc -3'
miRNA:   3'- -GGCUGGUUA-----UGGCU--UGaCCGCCGCGC- -5'
24327 3' -55.5 NC_005263.2 + 44151 0.71 0.386326
Target:  5'- aCGGCC--UGCCaGGcucGCUGGCuGGCGCGu -3'
miRNA:   3'- gGCUGGuuAUGG-CU---UGACCG-CCGCGC- -5'
24327 3' -55.5 NC_005263.2 + 35758 0.7 0.442214
Target:  5'- gCgGGCgCGGuUACUGcGGCUGGCGGCGUGc -3'
miRNA:   3'- -GgCUG-GUU-AUGGC-UUGACCGCCGCGC- -5'
24327 3' -55.5 NC_005263.2 + 36100 0.7 0.462828
Target:  5'- aCCGuCCGAUACgaCGAGCUGGCccguaacacgacgcuGCGCGc -3'
miRNA:   3'- -GGCuGGUUAUG--GCUUGACCGc--------------CGCGC- -5'
24327 3' -55.5 NC_005263.2 + 19743 0.78 0.15398
Target:  5'- gCGAUCGGcGCUGGcgcGCUGGCGGCGCu -3'
miRNA:   3'- gGCUGGUUaUGGCU---UGACCGCCGCGc -5'
24327 3' -55.5 NC_005263.2 + 14092 0.74 0.275211
Target:  5'- gUCGGCUggUACCG-GCUGcGCGGCGg- -3'
miRNA:   3'- -GGCUGGuuAUGGCuUGAC-CGCCGCgc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.