miRNA display CGI


Results 1 - 20 of 120 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24327 3' -55.5 NC_005263.2 + 46420 1.1 0.000787
Target:  5'- aCCGACCAAUACCGAACUGGCGGCGCGc -3'
miRNA:   3'- -GGCUGGUUAUGGCUUGACCGCCGCGC- -5'
24327 3' -55.5 NC_005263.2 + 37959 0.84 0.058964
Target:  5'- aCCGGCCGAUGCCGcGCcGGCuGGCGCu -3'
miRNA:   3'- -GGCUGGUUAUGGCuUGaCCG-CCGCGc -5'
24327 3' -55.5 NC_005263.2 + 39022 0.81 0.090353
Target:  5'- aCCGGCCGAUcgacCCGAACUGGCacgucgaGGCGCu -3'
miRNA:   3'- -GGCUGGUUAu---GGCUUGACCG-------CCGCGc -5'
24327 3' -55.5 NC_005263.2 + 10162 0.79 0.134189
Target:  5'- aUCGGCCGGUugcgcACCGGcuGCcGGCGGCGCGc -3'
miRNA:   3'- -GGCUGGUUA-----UGGCU--UGaCCGCCGCGC- -5'
24327 3' -55.5 NC_005263.2 + 19743 0.78 0.15398
Target:  5'- gCGAUCGGcGCUGGcgcGCUGGCGGCGCu -3'
miRNA:   3'- gGCUGGUUaUGGCU---UGACCGCCGCGc -5'
24327 3' -55.5 NC_005263.2 + 24794 0.76 0.207049
Target:  5'- gCGGCUc--GCCGGGCgucGGCGGCGCGu -3'
miRNA:   3'- gGCUGGuuaUGGCUUGa--CCGCCGCGC- -5'
24327 3' -55.5 NC_005263.2 + 47830 0.76 0.207049
Target:  5'- gUCGACCGugACCGuGCUcGGUGGCGUGa -3'
miRNA:   3'- -GGCUGGUuaUGGCuUGA-CCGCCGCGC- -5'
24327 3' -55.5 NC_005263.2 + 15469 0.75 0.229974
Target:  5'- gCGACgAuuUGCCGuGCUgcGGCGGCGCGg -3'
miRNA:   3'- gGCUGgUu-AUGGCuUGA--CCGCCGCGC- -5'
24327 3' -55.5 NC_005263.2 + 45827 0.75 0.244733
Target:  5'- aUGACCGAUuugaccgcaaccuugGCCGAGC-GcGCGGCGCGc -3'
miRNA:   3'- gGCUGGUUA---------------UGGCUUGaC-CGCCGCGC- -5'
24327 3' -55.5 NC_005263.2 + 24698 0.74 0.261601
Target:  5'- aCGGCgGcgcGCCGAACgugccgGGCGGCGCa -3'
miRNA:   3'- gGCUGgUua-UGGCUUGa-----CCGCCGCGc -5'
24327 3' -55.5 NC_005263.2 + 14092 0.74 0.275211
Target:  5'- gUCGGCUggUACCG-GCUGcGCGGCGg- -3'
miRNA:   3'- -GGCUGGuuAUGGCuUGAC-CGCCGCgc -5'
24327 3' -55.5 NC_005263.2 + 22511 0.73 0.311701
Target:  5'- cCCGGCgCAcuccGUugCGAucaGCgugacgGGCGGCGCGg -3'
miRNA:   3'- -GGCUG-GU----UAugGCU---UGa-----CCGCCGCGC- -5'
24327 3' -55.5 NC_005263.2 + 39677 0.72 0.342634
Target:  5'- gCCGACUGcUGCCGGacgcgaACUucacggucgccgaGGCGGCGCGc -3'
miRNA:   3'- -GGCUGGUuAUGGCU------UGA-------------CCGCCGCGC- -5'
24327 3' -55.5 NC_005263.2 + 14842 0.72 0.35175
Target:  5'- gCCGACCAccagaAUucGCUGAugUuGCGGCGCa -3'
miRNA:   3'- -GGCUGGU-----UA--UGGCUugAcCGCCGCGc -5'
24327 3' -55.5 NC_005263.2 + 3151 0.72 0.35175
Target:  5'- aCCGACgAGcacgugGCCGGGCUucGUGGCGCGg -3'
miRNA:   3'- -GGCUGgUUa-----UGGCUUGAc-CGCCGCGC- -5'
24327 3' -55.5 NC_005263.2 + 9973 0.72 0.36876
Target:  5'- gCGACCAGUGCCGGGCaGGCcGUucaGCa -3'
miRNA:   3'- gGCUGGUUAUGGCUUGaCCGcCG---CGc -5'
24327 3' -55.5 NC_005263.2 + 2784 0.72 0.36876
Target:  5'- aCGACCucgcgACCGGGCUGGuCGaGUGCc -3'
miRNA:   3'- gGCUGGuua--UGGCUUGACC-GC-CGCGc -5'
24327 3' -55.5 NC_005263.2 + 24520 0.71 0.386326
Target:  5'- aCGACgAuuuacGUAUCGGGCaacggcGGCGGCGCGg -3'
miRNA:   3'- gGCUGgU-----UAUGGCUUGa-----CCGCCGCGC- -5'
24327 3' -55.5 NC_005263.2 + 44151 0.71 0.386326
Target:  5'- aCGGCC--UGCCaGGcucGCUGGCuGGCGCGu -3'
miRNA:   3'- gGCUGGuuAUGG-CU---UGACCG-CCGCGC- -5'
24327 3' -55.5 NC_005263.2 + 43346 0.71 0.389905
Target:  5'- -gGAUCGAUACCGuucgaugucggugaaAGCUGGCgugcucgcgGGCGCGa -3'
miRNA:   3'- ggCUGGUUAUGGC---------------UUGACCG---------CCGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.