miRNA display CGI


Results 1 - 20 of 120 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24327 3' -55.5 NC_005263.2 + 521 0.66 0.673851
Target:  5'- aCCGucuCCAAUgcaaagcGCCGcccGCaGGUGGCGCa -3'
miRNA:   3'- -GGCu--GGUUA-------UGGCu--UGaCCGCCGCGc -5'
24327 3' -55.5 NC_005263.2 + 1175 0.68 0.576683
Target:  5'- gCGACUuGUGCCucguGCUGcGCGGCaGCGc -3'
miRNA:   3'- gGCUGGuUAUGGcu--UGAC-CGCCG-CGC- -5'
24327 3' -55.5 NC_005263.2 + 1250 0.68 0.587537
Target:  5'- uCCGGCCAggAUGCgCGAuccggguaagGCUcagucgGaGCGGCGCGa -3'
miRNA:   3'- -GGCUGGU--UAUG-GCU----------UGA------C-CGCCGCGC- -5'
24327 3' -55.5 NC_005263.2 + 1341 0.68 0.602792
Target:  5'- aCGAUCAcgGCCGGuugcagaaucuuuuuGCcGGCGGCGg- -3'
miRNA:   3'- gGCUGGUuaUGGCU---------------UGaCCGCCGCgc -5'
24327 3' -55.5 NC_005263.2 + 2309 0.68 0.565875
Target:  5'- gCCGGCacgcccgcGuuGAACUGGCGGaaCGCGa -3'
miRNA:   3'- -GGCUGguua----UggCUUGACCGCC--GCGC- -5'
24327 3' -55.5 NC_005263.2 + 2784 0.72 0.36876
Target:  5'- aCGACCucgcgACCGGGCUGGuCGaGUGCc -3'
miRNA:   3'- gGCUGGuua--UGGCUUGACC-GC-CGCGc -5'
24327 3' -55.5 NC_005263.2 + 3151 0.72 0.35175
Target:  5'- aCCGACgAGcacgugGCCGGGCUucGUGGCGCGg -3'
miRNA:   3'- -GGCUGgUUa-----UGGCUUGAc-CGCCGCGC- -5'
24327 3' -55.5 NC_005263.2 + 3153 0.67 0.642184
Target:  5'- gUCGGCCAGcugGCCGGGCUGcaCGGaCGUa -3'
miRNA:   3'- -GGCUGGUUa--UGGCUUGACc-GCC-GCGc -5'
24327 3' -55.5 NC_005263.2 + 3212 0.67 0.609347
Target:  5'- gCGGCCAGgaucggGCCGAccucgggcgacgACaGGUaGGCGCGa -3'
miRNA:   3'- gGCUGGUUa-----UGGCU------------UGaCCG-CCGCGC- -5'
24327 3' -55.5 NC_005263.2 + 5049 0.66 0.696592
Target:  5'- gCCGACUAuugGCCG-ACgucGGCGuCGCGc -3'
miRNA:   3'- -GGCUGGUua-UGGCuUGa--CCGCcGCGC- -5'
24327 3' -55.5 NC_005263.2 + 5128 0.66 0.674939
Target:  5'- gUCGAgCuuGUugCGAucCUGGUGGUGCa -3'
miRNA:   3'- -GGCUgGu-UAugGCUu-GACCGCCGCGc -5'
24327 3' -55.5 NC_005263.2 + 5245 0.66 0.68579
Target:  5'- gCGAUCAGgcGCCGucaucAGCgGGCGGUGCc -3'
miRNA:   3'- gGCUGGUUa-UGGC-----UUGaCCGCCGCGc -5'
24327 3' -55.5 NC_005263.2 + 7005 0.71 0.404436
Target:  5'- aCCGcAC--GUG-CGGAUUGGCGGCGCGa -3'
miRNA:   3'- -GGC-UGguUAUgGCUUGACCGCCGCGC- -5'
24327 3' -55.5 NC_005263.2 + 7214 0.66 0.717998
Target:  5'- gCGACCAucGCCGGcgACcagaaGGCGcGCGCc -3'
miRNA:   3'- gGCUGGUuaUGGCU--UGa----CCGC-CGCGc -5'
24327 3' -55.5 NC_005263.2 + 8883 0.67 0.668407
Target:  5'- cCCGugC--UGCCGGugcagcgcgcgcaauACUGGCGGCa-- -3'
miRNA:   3'- -GGCugGuuAUGGCU---------------UGACCGCCGcgc -5'
24327 3' -55.5 NC_005263.2 + 9168 0.66 0.696592
Target:  5'- uUGGCC-GUGCCGAucagcgcgaagcgacGCgggugcgcaaacgGGCGGCGCu -3'
miRNA:   3'- gGCUGGuUAUGGCU---------------UGa------------CCGCCGCGc -5'
24327 3' -55.5 NC_005263.2 + 9443 0.66 0.717998
Target:  5'- gCCGAUCAAga-CGGGCaccacgGGCagcGGCGCGc -3'
miRNA:   3'- -GGCUGGUUaugGCUUGa-----CCG---CCGCGC- -5'
24327 3' -55.5 NC_005263.2 + 9546 0.71 0.395314
Target:  5'- gCGACCGAcGCgGcGCUcgcggcuugccaGGCGGCGCGc -3'
miRNA:   3'- gGCUGGUUaUGgCuUGA------------CCGCCGCGC- -5'
24327 3' -55.5 NC_005263.2 + 9768 0.67 0.665137
Target:  5'- aCCGACUucgcauccaucgcACCGAAC-GGgGGCGCc -3'
miRNA:   3'- -GGCUGGuua----------UGGCUUGaCCgCCGCGc -5'
24327 3' -55.5 NC_005263.2 + 9973 0.72 0.36876
Target:  5'- gCGACCAGUGCCGGGCaGGCcGUucaGCa -3'
miRNA:   3'- gGCUGGUUAUGGCUUGaCCGcCG---CGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.