miRNA display CGI


Results 21 - 40 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24327 5' -54.3 NC_005263.2 + 15099 0.66 0.776723
Target:  5'- aCCGaGUCGuACCAGUUCuCGAgC-CCGu -3'
miRNA:   3'- cGGC-CAGC-UGGUCAAGuGCUaGuGGC- -5'
24327 5' -54.3 NC_005263.2 + 17679 0.69 0.614833
Target:  5'- gGCaCGGUCGACCAGcaaaUCGacuuccuaaugucCGAUC-CCGa -3'
miRNA:   3'- -CG-GCCAGCUGGUCa---AGU-------------GCUAGuGGC- -5'
24327 5' -54.3 NC_005263.2 + 17710 0.66 0.786667
Target:  5'- aGCCGGUCGcGCUAuccgaaGCGAUCGCg- -3'
miRNA:   3'- -CGGCCAGC-UGGUcaag--UGCUAGUGgc -5'
24327 5' -54.3 NC_005263.2 + 19112 0.78 0.187703
Target:  5'- uGCCGGUCGGCCGcgccgaGCGcAUCGCCGg -3'
miRNA:   3'- -CGGCCAGCUGGUcaag--UGC-UAGUGGC- -5'
24327 5' -54.3 NC_005263.2 + 19288 0.69 0.583032
Target:  5'- cGCCG--CGugCGcgUCACGGUCACCGu -3'
miRNA:   3'- -CGGCcaGCugGUcaAGUGCUAGUGGC- -5'
24327 5' -54.3 NC_005263.2 + 19544 0.66 0.756395
Target:  5'- uGCCGuUCuAUCAGggCACGAUCGCa- -3'
miRNA:   3'- -CGGCcAGcUGGUCaaGUGCUAGUGgc -5'
24327 5' -54.3 NC_005263.2 + 19790 0.67 0.703553
Target:  5'- cGgCGGcCGACCAGaUUCgcgccGCGAUCGCg- -3'
miRNA:   3'- -CgGCCaGCUGGUC-AAG-----UGCUAGUGgc -5'
24327 5' -54.3 NC_005263.2 + 19808 0.68 0.675295
Target:  5'- uGCCGGUCGcacgGCCGGUacugcacaaggugagUCGCGcgCgAUCGa -3'
miRNA:   3'- -CGGCCAGC----UGGUCA---------------AGUGCuaG-UGGC- -5'
24327 5' -54.3 NC_005263.2 + 20101 0.67 0.735559
Target:  5'- uCUGGUCGACCA----GCG-UCGCCGc -3'
miRNA:   3'- cGGCCAGCUGGUcaagUGCuAGUGGC- -5'
24327 5' -54.3 NC_005263.2 + 20708 0.7 0.54942
Target:  5'- cGCCGGUCGugacgcaGCCGG-UCA-GcgCGCCGg -3'
miRNA:   3'- -CGGCCAGC-------UGGUCaAGUgCuaGUGGC- -5'
24327 5' -54.3 NC_005263.2 + 20853 0.68 0.636853
Target:  5'- cCCGGagaccuaacgcuaUCGGCCGGcggCGCGAUCACg- -3'
miRNA:   3'- cGGCC-------------AGCUGGUCaa-GUGCUAGUGgc -5'
24327 5' -54.3 NC_005263.2 + 20941 0.68 0.626941
Target:  5'- -aCGcGcCGACCAcGUUCACGA-CACCa -3'
miRNA:   3'- cgGC-CaGCUGGU-CAAGUGCUaGUGGc -5'
24327 5' -54.3 NC_005263.2 + 21333 0.66 0.766628
Target:  5'- cGUCGGUCuGAU--GUUCGCGAgcgCGCUGa -3'
miRNA:   3'- -CGGCCAG-CUGguCAAGUGCUa--GUGGC- -5'
24327 5' -54.3 NC_005263.2 + 21876 0.72 0.408949
Target:  5'- gGCCGGcaagacgcuaUCGACCgAGUUgACGA-CGCCGc -3'
miRNA:   3'- -CGGCC----------AGCUGG-UCAAgUGCUaGUGGC- -5'
24327 5' -54.3 NC_005263.2 + 22229 0.7 0.518539
Target:  5'- cGCCGGcgUCGGcCCGGUU-GCGA-CGCCGa -3'
miRNA:   3'- -CGGCC--AGCU-GGUCAAgUGCUaGUGGC- -5'
24327 5' -54.3 NC_005263.2 + 23047 0.68 0.670918
Target:  5'- uGCCGGUCGACg---UCGgGAUCGUCGu -3'
miRNA:   3'- -CGGCCAGCUGgucaAGUgCUAGUGGC- -5'
24327 5' -54.3 NC_005263.2 + 24399 0.66 0.776723
Target:  5'- gGuuGGUCuGugCGGUcaUguCGAUCGCCu -3'
miRNA:   3'- -CggCCAG-CugGUCA--AguGCUAGUGGc -5'
24327 5' -54.3 NC_005263.2 + 24716 0.72 0.447193
Target:  5'- uGCCGGgCGGCgCAGgcggCaauacgACGAUCACCGg -3'
miRNA:   3'- -CGGCCaGCUG-GUCaa--G------UGCUAGUGGC- -5'
24327 5' -54.3 NC_005263.2 + 26133 0.66 0.766628
Target:  5'- aGCgGGUCGAC--GUUgGCGAUCAaCUGc -3'
miRNA:   3'- -CGgCCAGCUGguCAAgUGCUAGU-GGC- -5'
24327 5' -54.3 NC_005263.2 + 26533 0.66 0.786667
Target:  5'- cGCCGG-CGGCgAGcaCGCGG-CGCUGg -3'
miRNA:   3'- -CGGCCaGCUGgUCaaGUGCUaGUGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.