miRNA display CGI


Results 1 - 20 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24327 5' -54.3 NC_005263.2 + 877 0.7 0.518539
Target:  5'- uGCCGGcCGGCgCuucGUUCagcgcgGCGGUCGCCGc -3'
miRNA:   3'- -CGGCCaGCUG-Gu--CAAG------UGCUAGUGGC- -5'
24327 5' -54.3 NC_005263.2 + 1856 0.74 0.314985
Target:  5'- gGCCGGcgaCGugCGGUUCugGcgCGCCu -3'
miRNA:   3'- -CGGCCa--GCugGUCAAGugCuaGUGGc -5'
24327 5' -54.3 NC_005263.2 + 2080 0.66 0.786667
Target:  5'- aCCGGcgauaUCGuGCCAGUugucgguguaaUCGgGGUCGCCGu -3'
miRNA:   3'- cGGCC-----AGC-UGGUCA-----------AGUgCUAGUGGC- -5'
24327 5' -54.3 NC_005263.2 + 2769 0.66 0.746034
Target:  5'- uGCCGGUCGugUucgUCACGA---CCGu -3'
miRNA:   3'- -CGGCCAGCugGucaAGUGCUaguGGC- -5'
24327 5' -54.3 NC_005263.2 + 3232 0.68 0.659953
Target:  5'- cUCGGgCGACgaCAGguaggCGCGAUCGCCGc -3'
miRNA:   3'- cGGCCaGCUG--GUCaa---GUGCUAGUGGC- -5'
24327 5' -54.3 NC_005263.2 + 3785 0.72 0.437444
Target:  5'- uCUGGUCGGCC--UUUGCGAUCugCGa -3'
miRNA:   3'- cGGCCAGCUGGucAAGUGCUAGugGC- -5'
24327 5' -54.3 NC_005263.2 + 4841 0.67 0.735559
Target:  5'- aGUCGGUUG-CCcGUaCGCGcgCGCCGu -3'
miRNA:   3'- -CGGCCAGCuGGuCAaGUGCuaGUGGC- -5'
24327 5' -54.3 NC_005263.2 + 5391 0.7 0.529115
Target:  5'- aGCCGGcgUUGACCuGUUCGCGuucuUCuGCCa -3'
miRNA:   3'- -CGGCC--AGCUGGuCAAGUGCu---AG-UGGc -5'
24327 5' -54.3 NC_005263.2 + 6128 0.66 0.756395
Target:  5'- gGCCGGUaugUCGGUgCGCGAUCGCa- -3'
miRNA:   3'- -CGGCCAgcuGGUCAaGUGCUAGUGgc -5'
24327 5' -54.3 NC_005263.2 + 6630 0.68 0.637954
Target:  5'- gGCgCGGUCGAgCAGUcgcgCGuCGGUCGCUu -3'
miRNA:   3'- -CG-GCCAGCUgGUCAa---GU-GCUAGUGGc -5'
24327 5' -54.3 NC_005263.2 + 7222 0.72 0.427818
Target:  5'- cGCCGG-CGACCAGaagGCGcgCGCCu -3'
miRNA:   3'- -CGGCCaGCUGGUCaagUGCuaGUGGc -5'
24327 5' -54.3 NC_005263.2 + 8404 0.66 0.786667
Target:  5'- cGCCGGcCauuuCCAGcUCGCGcUCGCCc -3'
miRNA:   3'- -CGGCCaGcu--GGUCaAGUGCuAGUGGc -5'
24327 5' -54.3 NC_005263.2 + 9094 0.76 0.238276
Target:  5'- gGUCGaUCGGCCGGUUCACGAaCACgGg -3'
miRNA:   3'- -CGGCcAGCUGGUCAAGUGCUaGUGgC- -5'
24327 5' -54.3 NC_005263.2 + 9247 0.67 0.735559
Target:  5'- uGUCGGUCGuCCAGagCuuGAUCucuuCCGu -3'
miRNA:   3'- -CGGCCAGCuGGUCaaGugCUAGu---GGC- -5'
24327 5' -54.3 NC_005263.2 + 9766 0.76 0.24455
Target:  5'- cGCCGGUCG-CCGcGUgCACGGUCGCgCGc -3'
miRNA:   3'- -CGGCCAGCuGGU-CAaGUGCUAGUG-GC- -5'
24327 5' -54.3 NC_005263.2 + 10150 0.68 0.636853
Target:  5'- aGCCGGcgcggcaUCGGCCGGUU-GCG--CACCGg -3'
miRNA:   3'- -CGGCC-------AGCUGGUCAAgUGCuaGUGGC- -5'
24327 5' -54.3 NC_005263.2 + 12062 0.71 0.457061
Target:  5'- uGUCGGUCGACCGagacGggCGCGAgUACCu -3'
miRNA:   3'- -CGGCCAGCUGGU----CaaGUGCUaGUGGc -5'
24327 5' -54.3 NC_005263.2 + 12338 0.7 0.538701
Target:  5'- cGCCGGcgUGGCCGGUuuccucaagcgucUCGCGccgCGCCGc -3'
miRNA:   3'- -CGGCCa-GCUGGUCA-------------AGUGCua-GUGGC- -5'
24327 5' -54.3 NC_005263.2 + 14081 0.69 0.60494
Target:  5'- cGCCGGcccaugUCGGCUGGUaCcggcugcgcgGCGGUCGCCGu -3'
miRNA:   3'- -CGGCC------AGCUGGUCAaG----------UGCUAGUGGC- -5'
24327 5' -54.3 NC_005263.2 + 14171 0.76 0.25751
Target:  5'- gGCCGG-CGGCCGGUgugCGCGAgCugCGu -3'
miRNA:   3'- -CGGCCaGCUGGUCAa--GUGCUaGugGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.