miRNA display CGI


Results 1 - 20 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24327 5' -54.3 NC_005263.2 + 46458 1.11 0.000921
Target:  5'- uGCCGGUCGACCAGUUCACGAUCACCGa -3'
miRNA:   3'- -CGGCCAGCUGGUCAAGUGCUAGUGGC- -5'
24327 5' -54.3 NC_005263.2 + 47860 0.69 0.615934
Target:  5'- -aCGuGUCGACCcuacuugCACGAUCGCCu -3'
miRNA:   3'- cgGC-CAGCUGGucaa---GUGCUAGUGGc -5'
24327 5' -54.3 NC_005263.2 + 6630 0.68 0.637954
Target:  5'- gGCgCGGUCGAgCAGUcgcgCGuCGGUCGCUu -3'
miRNA:   3'- -CG-GCCAGCUgGUCAa---GU-GCUAGUGGc -5'
24327 5' -54.3 NC_005263.2 + 26533 0.66 0.786667
Target:  5'- cGCCGG-CGGCgAGcaCGCGG-CGCUGg -3'
miRNA:   3'- -CGGCCaGCUGgUCaaGUGCUaGUGGC- -5'
24327 5' -54.3 NC_005263.2 + 3785 0.72 0.437444
Target:  5'- uCUGGUCGGCC--UUUGCGAUCugCGa -3'
miRNA:   3'- cGGCCAGCUGGucAAGUGCUAGugGC- -5'
24327 5' -54.3 NC_005263.2 + 39686 0.72 0.447193
Target:  5'- uGCCGGacgCGAac--UUCACGGUCGCCGa -3'
miRNA:   3'- -CGGCCa--GCUggucAAGUGCUAGUGGC- -5'
24327 5' -54.3 NC_005263.2 + 31599 0.71 0.487343
Target:  5'- uGCCGGUUGgucauGCCGG-UCGCGAcgGCCGc -3'
miRNA:   3'- -CGGCCAGC-----UGGUCaAGUGCUagUGGC- -5'
24327 5' -54.3 NC_005263.2 + 5391 0.7 0.529115
Target:  5'- aGCCGGcgUUGACCuGUUCGCGuucuUCuGCCa -3'
miRNA:   3'- -CGGCC--AGCUGGuCAAGUGCu---AG-UGGc -5'
24327 5' -54.3 NC_005263.2 + 30224 0.69 0.561287
Target:  5'- cGCCGGUCGACUgaucGUUCGCGGcgaagcgugCGCgGu -3'
miRNA:   3'- -CGGCCAGCUGGu---CAAGUGCUa--------GUGgC- -5'
24327 5' -54.3 NC_005263.2 + 14081 0.69 0.60494
Target:  5'- cGCCGGcccaugUCGGCUGGUaCcggcugcgcgGCGGUCGCCGu -3'
miRNA:   3'- -CGGCC------AGCUGGUCAaG----------UGCUAGUGGC- -5'
24327 5' -54.3 NC_005263.2 + 35199 0.69 0.590684
Target:  5'- cGCCGuuuGUCGuCCAGUUCGuCGAaccugcagucugagUCGCCa -3'
miRNA:   3'- -CGGC---CAGCuGGUCAAGU-GCU--------------AGUGGc -5'
24327 5' -54.3 NC_005263.2 + 20708 0.7 0.54942
Target:  5'- cGCCGGUCGugacgcaGCCGG-UCA-GcgCGCCGg -3'
miRNA:   3'- -CGGCCAGC-------UGGUCaAGUgCuaGUGGC- -5'
24327 5' -54.3 NC_005263.2 + 19112 0.78 0.187703
Target:  5'- uGCCGGUCGGCCGcgccgaGCGcAUCGCCGg -3'
miRNA:   3'- -CGGCCAGCUGGUcaag--UGC-UAGUGGC- -5'
24327 5' -54.3 NC_005263.2 + 36018 0.69 0.59397
Target:  5'- aCCGuGcucgCGAUCuGGUUCGCGGUCGCCu -3'
miRNA:   3'- cGGC-Ca---GCUGG-UCAAGUGCUAGUGGc -5'
24327 5' -54.3 NC_005263.2 + 14171 0.76 0.25751
Target:  5'- gGCCGG-CGGCCGGUgugCGCGAgCugCGu -3'
miRNA:   3'- -CGGCCaGCUGGUCAa--GUGCUaGugGC- -5'
24327 5' -54.3 NC_005263.2 + 12338 0.7 0.538701
Target:  5'- cGCCGGcgUGGCCGGUuuccucaagcgucUCGCGccgCGCCGc -3'
miRNA:   3'- -CGGCCa-GCUGGUCA-------------AGUGCua-GUGGC- -5'
24327 5' -54.3 NC_005263.2 + 39094 0.69 0.60494
Target:  5'- aGCCGGaCGGCgAGUacgCGCGAcucgugCGCCGu -3'
miRNA:   3'- -CGGCCaGCUGgUCAa--GUGCUa-----GUGGC- -5'
24327 5' -54.3 NC_005263.2 + 10150 0.68 0.636853
Target:  5'- aGCCGGcgcggcaUCGGCCGGUU-GCG--CACCGg -3'
miRNA:   3'- -CGGCC-------AGCUGGUCAAgUGCuaGUGGC- -5'
24327 5' -54.3 NC_005263.2 + 1856 0.74 0.314985
Target:  5'- gGCCGGcgaCGugCGGUUCugGcgCGCCu -3'
miRNA:   3'- -CGGCCa--GCugGUCAAGugCuaGUGGc -5'
24327 5' -54.3 NC_005263.2 + 12062 0.71 0.457061
Target:  5'- uGUCGGUCGACCGagacGggCGCGAgUACCu -3'
miRNA:   3'- -CGGCCAGCUGGU----CaaGUGCUaGUGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.