miRNA display CGI


Results 1 - 20 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24327 5' -54.3 NC_005263.2 + 46458 1.11 0.000921
Target:  5'- uGCCGGUCGACCAGUUCACGAUCACCGa -3'
miRNA:   3'- -CGGCCAGCUGGUCAAGUGCUAGUGGC- -5'
24327 5' -54.3 NC_005263.2 + 19112 0.78 0.187703
Target:  5'- uGCCGGUCGGCCGcgccgaGCGcAUCGCCGg -3'
miRNA:   3'- -CGGCCAGCUGGUcaag--UGC-UAGUGGC- -5'
24327 5' -54.3 NC_005263.2 + 9094 0.76 0.238276
Target:  5'- gGUCGaUCGGCCGGUUCACGAaCACgGg -3'
miRNA:   3'- -CGGCcAGCUGGUCAAGUGCUaGUGgC- -5'
24327 5' -54.3 NC_005263.2 + 9766 0.76 0.24455
Target:  5'- cGCCGGUCG-CCGcGUgCACGGUCGCgCGc -3'
miRNA:   3'- -CGGCCAGCuGGU-CAaGUGCUAGUG-GC- -5'
24327 5' -54.3 NC_005263.2 + 14171 0.76 0.25751
Target:  5'- gGCCGG-CGGCCGGUgugCGCGAgCugCGu -3'
miRNA:   3'- -CGGCCaGCUGGUCAa--GUGCUaGugGC- -5'
24327 5' -54.3 NC_005263.2 + 1856 0.74 0.314985
Target:  5'- gGCCGGcgaCGugCGGUUCugGcgCGCCu -3'
miRNA:   3'- -CGGCCa--GCugGUCAAGugCuaGUGGc -5'
24327 5' -54.3 NC_005263.2 + 21876 0.72 0.408949
Target:  5'- gGCCGGcaagacgcuaUCGACCgAGUUgACGA-CGCCGc -3'
miRNA:   3'- -CGGCC----------AGCUGG-UCAAgUGCUaGUGGC- -5'
24327 5' -54.3 NC_005263.2 + 7222 0.72 0.427818
Target:  5'- cGCCGG-CGACCAGaagGCGcgCGCCu -3'
miRNA:   3'- -CGGCCaGCUGGUCaagUGCuaGUGGc -5'
24327 5' -54.3 NC_005263.2 + 43513 0.72 0.437444
Target:  5'- uGCCGGcgCGGCC-GUUCauggaaaagACGAUUGCCGa -3'
miRNA:   3'- -CGGCCa-GCUGGuCAAG---------UGCUAGUGGC- -5'
24327 5' -54.3 NC_005263.2 + 3785 0.72 0.437444
Target:  5'- uCUGGUCGGCC--UUUGCGAUCugCGa -3'
miRNA:   3'- cGGCCAGCUGGucAAGUGCUAGugGC- -5'
24327 5' -54.3 NC_005263.2 + 39686 0.72 0.447193
Target:  5'- uGCCGGacgCGAac--UUCACGGUCGCCGa -3'
miRNA:   3'- -CGGCCa--GCUggucAAGUGCUAGUGGC- -5'
24327 5' -54.3 NC_005263.2 + 24716 0.72 0.447193
Target:  5'- uGCCGGgCGGCgCAGgcggCaauacgACGAUCACCGg -3'
miRNA:   3'- -CGGCCaGCUG-GUCaa--G------UGCUAGUGGC- -5'
24327 5' -54.3 NC_005263.2 + 12062 0.71 0.457061
Target:  5'- uGUCGGUCGACCGagacGggCGCGAgUACCu -3'
miRNA:   3'- -CGGCCAGCUGGU----CaaGUGCUaGUGGc -5'
24327 5' -54.3 NC_005263.2 + 31599 0.71 0.487343
Target:  5'- uGCCGGUUGgucauGCCGG-UCGCGAcgGCCGc -3'
miRNA:   3'- -CGGCCAGC-----UGGUCaAGUGCUagUGGC- -5'
24327 5' -54.3 NC_005263.2 + 44183 0.7 0.518539
Target:  5'- uGCCGGUCGGCCugc-CGCcAUUGCCGc -3'
miRNA:   3'- -CGGCCAGCUGGucaaGUGcUAGUGGC- -5'
24327 5' -54.3 NC_005263.2 + 22229 0.7 0.518539
Target:  5'- cGCCGGcgUCGGcCCGGUU-GCGA-CGCCGa -3'
miRNA:   3'- -CGGCC--AGCU-GGUCAAgUGCUaGUGGC- -5'
24327 5' -54.3 NC_005263.2 + 877 0.7 0.518539
Target:  5'- uGCCGGcCGGCgCuucGUUCagcgcgGCGGUCGCCGc -3'
miRNA:   3'- -CGGCCaGCUG-Gu--CAAG------UGCUAGUGGC- -5'
24327 5' -54.3 NC_005263.2 + 5391 0.7 0.529115
Target:  5'- aGCCGGcgUUGACCuGUUCGCGuucuUCuGCCa -3'
miRNA:   3'- -CGGCC--AGCUGGuCAAGUGCu---AG-UGGc -5'
24327 5' -54.3 NC_005263.2 + 12338 0.7 0.538701
Target:  5'- cGCCGGcgUGGCCGGUuuccucaagcgucUCGCGccgCGCCGc -3'
miRNA:   3'- -CGGCCa-GCUGGUCA-------------AGUGCua-GUGGC- -5'
24327 5' -54.3 NC_005263.2 + 20708 0.7 0.54942
Target:  5'- cGCCGGUCGugacgcaGCCGG-UCA-GcgCGCCGg -3'
miRNA:   3'- -CGGCCAGC-------UGGUCaAGUgCuaGUGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.