miRNA display CGI


Results 21 - 40 of 78 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24328 5' -54.8 NC_005263.2 + 17566 0.72 0.331985
Target:  5'- --aGGaCGUCGAGCaGCGCAucgAGCUGCUc -3'
miRNA:   3'- gagCC-GUAGCUUGcCGUGU---UCGACGA- -5'
24328 5' -54.8 NC_005263.2 + 18752 0.69 0.492645
Target:  5'- aUCGGCGcgaUCGuagGCGGCGCGGuGCUcGCg -3'
miRNA:   3'- gAGCCGU---AGCu--UGCCGUGUU-CGA-CGa -5'
24328 5' -54.8 NC_005263.2 + 18911 0.7 0.412147
Target:  5'- -cCGGCcugcGUCGAgcgugaccgcGCGGCACGAGC-GCUc -3'
miRNA:   3'- gaGCCG----UAGCU----------UGCCGUGUUCGaCGA- -5'
24328 5' -54.8 NC_005263.2 + 19480 0.67 0.635716
Target:  5'- -aCGGCGcUCGAGCaGUACGGGUUGg- -3'
miRNA:   3'- gaGCCGU-AGCUUGcCGUGUUCGACga -5'
24328 5' -54.8 NC_005263.2 + 20671 0.66 0.691697
Target:  5'- -gCGGcCGUCGAaagcguguucgGCGGCGCGAaacCUGCg -3'
miRNA:   3'- gaGCC-GUAGCU-----------UGCCGUGUUc--GACGa -5'
24328 5' -54.8 NC_005263.2 + 21106 0.69 0.471802
Target:  5'- -gCGGCGaCGAGCccGGCGCAGcggguGCUGCUc -3'
miRNA:   3'- gaGCCGUaGCUUG--CCGUGUU-----CGACGA- -5'
24328 5' -54.8 NC_005263.2 + 22324 0.66 0.680574
Target:  5'- -cCGGCA-CGcucAGC-GCGCGGGCUGCUu -3'
miRNA:   3'- gaGCCGUaGC---UUGcCGUGUUCGACGA- -5'
24328 5' -54.8 NC_005263.2 + 22899 0.68 0.568518
Target:  5'- -aCGGCGUucgugcCGGACGGaggugccCAAGCUGCg -3'
miRNA:   3'- gaGCCGUA------GCUUGCCgu-----GUUCGACGa -5'
24328 5' -54.8 NC_005263.2 + 23205 0.67 0.635716
Target:  5'- uCUCGGCcgCucACGGUuguucCAGGUUGCg -3'
miRNA:   3'- -GAGCCGuaGcuUGCCGu----GUUCGACGa -5'
24328 5' -54.8 NC_005263.2 + 23312 0.7 0.451415
Target:  5'- -aCGGCGgccaggCGGGCGGCACc-GUUGCa -3'
miRNA:   3'- gaGCCGUa-----GCUUGCCGUGuuCGACGa -5'
24328 5' -54.8 NC_005263.2 + 23989 0.66 0.646963
Target:  5'- aUCGGCGgcuaccCGAAaGGCGCcgcGCUGCa -3'
miRNA:   3'- gAGCCGUa-----GCUUgCCGUGuu-CGACGa -5'
24328 5' -54.8 NC_005263.2 + 24365 0.67 0.613222
Target:  5'- uUCuGCG-CGAACGGCACGAGgaauuUUGCg -3'
miRNA:   3'- gAGcCGUaGCUUGCCGUGUUC-----GACGa -5'
24328 5' -54.8 NC_005263.2 + 24545 0.75 0.219114
Target:  5'- -gCGGCGgcgCGGGCGGCGgcGGCUGCg -3'
miRNA:   3'- gaGCCGUa--GCUUGCCGUguUCGACGa -5'
24328 5' -54.8 NC_005263.2 + 24577 0.68 0.557454
Target:  5'- gUCGGCAcgcCGAAUaucaugucgGGCGCAGGCggugGCg -3'
miRNA:   3'- gAGCCGUa--GCUUG---------CCGUGUUCGa---CGa -5'
24328 5' -54.8 NC_005263.2 + 24698 0.72 0.316596
Target:  5'- -aCGGCGgcgcgccgaacgugcCGGGCGGCGCAGGCgGCa -3'
miRNA:   3'- gaGCCGUa--------------GCUUGCCGUGUUCGaCGa -5'
24328 5' -54.8 NC_005263.2 + 24785 0.68 0.557454
Target:  5'- -gCGGCGUCG-GCGGCucgcCGGGCgucgGCg -3'
miRNA:   3'- gaGCCGUAGCuUGCCGu---GUUCGa---CGa -5'
24328 5' -54.8 NC_005263.2 + 24897 0.67 0.590797
Target:  5'- --aGGCGUCGGugcaagcgGCGGUGCAGGggGCUc -3'
miRNA:   3'- gagCCGUAGCU--------UGCCGUGUUCgaCGA- -5'
24328 5' -54.8 NC_005263.2 + 25078 0.67 0.635716
Target:  5'- -cCGGCAauUCGggUGGCGCuGGCacGCc -3'
miRNA:   3'- gaGCCGU--AGCuuGCCGUGuUCGa-CGa -5'
24328 5' -54.8 NC_005263.2 + 25586 0.73 0.277974
Target:  5'- uCUCGGCAUCGAGCaGGcCGCA-GCcGCc -3'
miRNA:   3'- -GAGCCGUAGCUUG-CC-GUGUuCGaCGa -5'
24328 5' -54.8 NC_005263.2 + 26523 0.69 0.503224
Target:  5'- -gCGGCGUCGAcgcCGGCGgCGAGCacgcgGCg -3'
miRNA:   3'- gaGCCGUAGCUu--GCCGU-GUUCGa----CGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.