miRNA display CGI


Results 1 - 20 of 78 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24328 5' -54.8 NC_005263.2 + 923 0.7 0.43152
Target:  5'- aCUCGucgacGCAUCGAACGGguuggcaccCGCGAGCgGCg -3'
miRNA:   3'- -GAGC-----CGUAGCUUGCC---------GUGUUCGaCGa -5'
24328 5' -54.8 NC_005263.2 + 991 0.71 0.402664
Target:  5'- -aCGGCGcuucguuucaUCGGGCGGCGuguuGGCUGCUu -3'
miRNA:   3'- gaGCCGU----------AGCUUGCCGUgu--UCGACGA- -5'
24328 5' -54.8 NC_005263.2 + 1047 0.68 0.52467
Target:  5'- uCUCGGCuuUCGuGCGGCGCuuGCgaggagGCUu -3'
miRNA:   3'- -GAGCCGu-AGCuUGCCGUGuuCGa-----CGA- -5'
24328 5' -54.8 NC_005263.2 + 1696 0.67 0.635716
Target:  5'- uUCGGUAUUGGuCGGUugGGGCaUGUc -3'
miRNA:   3'- gAGCCGUAGCUuGCCGugUUCG-ACGa -5'
24328 5' -54.8 NC_005263.2 + 4244 0.66 0.680574
Target:  5'- gUCGGCGUCaGGAUGccGCGCAcGUUGUUg -3'
miRNA:   3'- gAGCCGUAG-CUUGC--CGUGUuCGACGA- -5'
24328 5' -54.8 NC_005263.2 + 5238 0.67 0.639091
Target:  5'- aCUCGGCuaugaacccggccggGUCGAacgugauGCGGUACGggGGCgUGCUc -3'
miRNA:   3'- -GAGCCG---------------UAGCU-------UGCCGUGU--UCG-ACGA- -5'
24328 5' -54.8 NC_005263.2 + 8253 0.69 0.496865
Target:  5'- -aCGGCAgccggguaugcgcguUCGGACGGCcacagcGCGAGCgGCg -3'
miRNA:   3'- gaGCCGU---------------AGCUUGCCG------UGUUCGaCGa -5'
24328 5' -54.8 NC_005263.2 + 9455 0.67 0.624466
Target:  5'- --gGGCAccaCGGgcaGCGGCGCGcccGGCUGCa -3'
miRNA:   3'- gagCCGUa--GCU---UGCCGUGU---UCGACGa -5'
24328 5' -54.8 NC_005263.2 + 9540 0.66 0.646963
Target:  5'- -gCGGCAgCGAccgacGCGGCGCucGCgGCUu -3'
miRNA:   3'- gaGCCGUaGCU-----UGCCGUGuuCGaCGA- -5'
24328 5' -54.8 NC_005263.2 + 9731 0.73 0.291907
Target:  5'- uUCGGCcUCGGGCGGCACGccuucgaGGC-GCa -3'
miRNA:   3'- gAGCCGuAGCUUGCCGUGU-------UCGaCGa -5'
24328 5' -54.8 NC_005263.2 + 10157 0.72 0.340302
Target:  5'- -gCGGCAUCGGcCGGUugcGCAccGGCUGCc -3'
miRNA:   3'- gaGCCGUAGCUuGCCG---UGU--UCGACGa -5'
24328 5' -54.8 NC_005263.2 + 13085 0.72 0.34877
Target:  5'- -cCGGUGUCGGACGGC---AGCUGUa -3'
miRNA:   3'- gaGCCGUAGCUUGCCGuguUCGACGa -5'
24328 5' -54.8 NC_005263.2 + 13551 0.75 0.207571
Target:  5'- uUCGGCA-CGGuguacgggcGCGGCACGAGCgGCg -3'
miRNA:   3'- gAGCCGUaGCU---------UGCCGUGUUCGaCGa -5'
24328 5' -54.8 NC_005263.2 + 13838 0.74 0.257061
Target:  5'- uUCGuGCAUCGcGCGGUACucgggcAGCUGCg -3'
miRNA:   3'- gAGC-CGUAGCuUGCCGUGu-----UCGACGa -5'
24328 5' -54.8 NC_005263.2 + 14083 0.67 0.590797
Target:  5'- -cCGGCccauGUCGGcUGGUACcGGCUGCg -3'
miRNA:   3'- gaGCCG----UAGCUuGCCGUGuUCGACGa -5'
24328 5' -54.8 NC_005263.2 + 14157 0.72 0.331985
Target:  5'- cCUUGGCGacuUCGGgccgGCGGCcggugugcGCGAGCUGCg -3'
miRNA:   3'- -GAGCCGU---AGCU----UGCCG--------UGUUCGACGa -5'
24328 5' -54.8 NC_005263.2 + 14889 0.66 0.691697
Target:  5'- gUCGGC--CGAgugcagguGCGGCACGAG-UGCg -3'
miRNA:   3'- gAGCCGuaGCU--------UGCCGUGUUCgACGa -5'
24328 5' -54.8 NC_005263.2 + 15677 0.72 0.323818
Target:  5'- gCUUGGCGUgccaaGAGCGGCcgGCGAGCUcGCa -3'
miRNA:   3'- -GAGCCGUAg----CUUGCCG--UGUUCGA-CGa -5'
24328 5' -54.8 NC_005263.2 + 16422 0.71 0.38412
Target:  5'- aCUCGGCGUCGGcGCuGGCGCGgcgGGCcucGCUg -3'
miRNA:   3'- -GAGCCGUAGCU-UG-CCGUGU---UCGa--CGA- -5'
24328 5' -54.8 NC_005263.2 + 16536 0.68 0.556351
Target:  5'- gUCGGCguuGUCGAgcACGGCGCGccgccugGGCaGCg -3'
miRNA:   3'- gAGCCG---UAGCU--UGCCGUGU-------UCGaCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.