miRNA display CGI


Results 1 - 20 of 78 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24328 5' -54.8 NC_005263.2 + 46573 1.07 0.001136
Target:  5'- gCUCGGCAUCGAACGGCACAAGCUGCUc -3'
miRNA:   3'- -GAGCCGUAGCUUGCCGUGUUCGACGA- -5'
24328 5' -54.8 NC_005263.2 + 33047 0.68 0.557454
Target:  5'- cCUCGGU--CGAcagcACGGUuuCGAGCUGCa -3'
miRNA:   3'- -GAGCCGuaGCU----UGCCGu-GUUCGACGa -5'
24328 5' -54.8 NC_005263.2 + 14083 0.67 0.590797
Target:  5'- -cCGGCccauGUCGGcUGGUACcGGCUGCg -3'
miRNA:   3'- gaGCCG----UAGCUuGCCGUGuUCGACGa -5'
24328 5' -54.8 NC_005263.2 + 44127 0.66 0.702759
Target:  5'- gCUCGGCGgcgCGcgcccguuacAACGGCcugcCAGGCUcGCUg -3'
miRNA:   3'- -GAGCCGUa--GC----------UUGCCGu---GUUCGA-CGA- -5'
24328 5' -54.8 NC_005263.2 + 13838 0.74 0.257061
Target:  5'- uUCGuGCAUCGcGCGGUACucgggcAGCUGCg -3'
miRNA:   3'- gAGC-CGUAGCuUGCCGUGu-----UCGACGa -5'
24328 5' -54.8 NC_005263.2 + 15677 0.72 0.323818
Target:  5'- gCUUGGCGUgccaaGAGCGGCcgGCGAGCUcGCa -3'
miRNA:   3'- -GAGCCGUAg----CUUGCCG--UGUUCGA-CGa -5'
24328 5' -54.8 NC_005263.2 + 17566 0.72 0.331985
Target:  5'- --aGGaCGUCGAGCaGCGCAucgAGCUGCUc -3'
miRNA:   3'- gagCC-GUAGCUUGcCGUGU---UCGACGA- -5'
24328 5' -54.8 NC_005263.2 + 38144 0.72 0.331985
Target:  5'- -cCGGCAUCuGGuc-GCACAAGCUGCa -3'
miRNA:   3'- gaGCCGUAG-CUugcCGUGUUCGACGa -5'
24328 5' -54.8 NC_005263.2 + 38683 0.72 0.340302
Target:  5'- aUCGGCc-CGGGCGGCACGGGCa--- -3'
miRNA:   3'- gAGCCGuaGCUUGCCGUGUUCGacga -5'
24328 5' -54.8 NC_005263.2 + 46498 0.68 0.550846
Target:  5'- aCUCGGCGUCGAaguguccgccgcgcuGCucGGCACGuccaAGCgUGCc -3'
miRNA:   3'- -GAGCCGUAGCU---------------UG--CCGUGU----UCG-ACGa -5'
24328 5' -54.8 NC_005263.2 + 28966 0.71 0.402664
Target:  5'- aUCGGUGUCgcgGAAUucgGGCGCAuGCUGCUg -3'
miRNA:   3'- gAGCCGUAG---CUUG---CCGUGUuCGACGA- -5'
24328 5' -54.8 NC_005263.2 + 10157 0.72 0.340302
Target:  5'- -gCGGCAUCGGcCGGUugcGCAccGGCUGCc -3'
miRNA:   3'- gaGCCGUAGCUuGCCG---UGU--UCGACGa -5'
24328 5' -54.8 NC_005263.2 + 31479 0.81 0.091387
Target:  5'- uUCGGCgccuggcccGUC-AGCGGCGCGAGCUGCUg -3'
miRNA:   3'- gAGCCG---------UAGcUUGCCGUGUUCGACGA- -5'
24328 5' -54.8 NC_005263.2 + 21106 0.69 0.471802
Target:  5'- -gCGGCGaCGAGCccGGCGCAGcggguGCUGCUc -3'
miRNA:   3'- gaGCCGUaGCUUG--CCGUGUU-----CGACGA- -5'
24328 5' -54.8 NC_005263.2 + 44414 0.76 0.190718
Target:  5'- aUUGGCGUCGAcgucgaaGCGGCACAGGCg--- -3'
miRNA:   3'- gAGCCGUAGCU-------UGCCGUGUUCGacga -5'
24328 5' -54.8 NC_005263.2 + 14157 0.72 0.331985
Target:  5'- cCUUGGCGacuUCGGgccgGCGGCcggugugcGCGAGCUGCg -3'
miRNA:   3'- -GAGCCGU---AGCU----UGCCG--------UGUUCGACGa -5'
24328 5' -54.8 NC_005263.2 + 26523 0.69 0.503224
Target:  5'- -gCGGCGUCGAcgcCGGCGgCGAGCacgcgGCg -3'
miRNA:   3'- gaGCCGUAGCUu--GCCGU-GUUCGa----CGa -5'
24328 5' -54.8 NC_005263.2 + 22899 0.68 0.568518
Target:  5'- -aCGGCGUucgugcCGGACGGaggugccCAAGCUGCg -3'
miRNA:   3'- gaGCCGUA------GCUUGCCgu-----GUUCGACGa -5'
24328 5' -54.8 NC_005263.2 + 13551 0.75 0.207571
Target:  5'- uUCGGCA-CGGuguacgggcGCGGCACGAGCgGCg -3'
miRNA:   3'- gAGCCGUaGCU---------UGCCGUGUUCGaCGa -5'
24328 5' -54.8 NC_005263.2 + 45057 0.72 0.323818
Target:  5'- --gGGCAUCG-ACGGuUACAAGCUcGCUg -3'
miRNA:   3'- gagCCGUAGCuUGCC-GUGUUCGA-CGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.