miRNA display CGI


Results 1 - 20 of 78 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24328 5' -54.8 NC_005263.2 + 46573 1.07 0.001136
Target:  5'- gCUCGGCAUCGAACGGCACAAGCUGCUc -3'
miRNA:   3'- -GAGCCGUAGCUUGCCGUGUUCGACGA- -5'
24328 5' -54.8 NC_005263.2 + 31479 0.81 0.091387
Target:  5'- uUCGGCgccuggcccGUC-AGCGGCGCGAGCUGCUg -3'
miRNA:   3'- gAGCCG---------UAGcUUGCCGUGUUCGACGA- -5'
24328 5' -54.8 NC_005263.2 + 44414 0.76 0.190718
Target:  5'- aUUGGCGUCGAcgucgaaGCGGCACAGGCg--- -3'
miRNA:   3'- gAGCCGUAGCU-------UGCCGUGUUCGacga -5'
24328 5' -54.8 NC_005263.2 + 13551 0.75 0.207571
Target:  5'- uUCGGCA-CGGuguacgggcGCGGCACGAGCgGCg -3'
miRNA:   3'- gAGCCGUaGCU---------UGCCGUGUUCGaCGa -5'
24328 5' -54.8 NC_005263.2 + 24545 0.75 0.219114
Target:  5'- -gCGGCGgcgCGGGCGGCGgcGGCUGCg -3'
miRNA:   3'- gaGCCGUa--GCUUGCCGUguUCGACGa -5'
24328 5' -54.8 NC_005263.2 + 27960 0.74 0.243847
Target:  5'- -aCGGCG-CGGAUGGCccaGAGCUGCUg -3'
miRNA:   3'- gaGCCGUaGCUUGCCGug-UUCGACGA- -5'
24328 5' -54.8 NC_005263.2 + 13838 0.74 0.257061
Target:  5'- uUCGuGCAUCGcGCGGUACucgggcAGCUGCg -3'
miRNA:   3'- gAGC-CGUAGCuUGCCGUGu-----UCGACGa -5'
24328 5' -54.8 NC_005263.2 + 25586 0.73 0.277974
Target:  5'- uCUCGGCAUCGAGCaGGcCGCA-GCcGCc -3'
miRNA:   3'- -GAGCCGUAGCUUG-CC-GUGUuCGaCGa -5'
24328 5' -54.8 NC_005263.2 + 9731 0.73 0.291907
Target:  5'- uUCGGCcUCGGGCGGCACGccuucgaGGC-GCa -3'
miRNA:   3'- gAGCCGuAGCUUGCCGUGU-------UCGaCGa -5'
24328 5' -54.8 NC_005263.2 + 43253 0.73 0.307935
Target:  5'- -gCGGCAUCGGcACGGCGCGcGCguacggGCa -3'
miRNA:   3'- gaGCCGUAGCU-UGCCGUGUuCGa-----CGa -5'
24328 5' -54.8 NC_005263.2 + 24698 0.72 0.316596
Target:  5'- -aCGGCGgcgcgccgaacgugcCGGGCGGCGCAGGCgGCa -3'
miRNA:   3'- gaGCCGUa--------------GCUUGCCGUGUUCGaCGa -5'
24328 5' -54.8 NC_005263.2 + 15677 0.72 0.323818
Target:  5'- gCUUGGCGUgccaaGAGCGGCcgGCGAGCUcGCa -3'
miRNA:   3'- -GAGCCGUAg----CUUGCCG--UGUUCGA-CGa -5'
24328 5' -54.8 NC_005263.2 + 45057 0.72 0.323818
Target:  5'- --gGGCAUCG-ACGGuUACAAGCUcGCUg -3'
miRNA:   3'- gagCCGUAGCuUGCC-GUGUUCGA-CGA- -5'
24328 5' -54.8 NC_005263.2 + 17566 0.72 0.331985
Target:  5'- --aGGaCGUCGAGCaGCGCAucgAGCUGCUc -3'
miRNA:   3'- gagCC-GUAGCUUGcCGUGU---UCGACGA- -5'
24328 5' -54.8 NC_005263.2 + 38144 0.72 0.331985
Target:  5'- -cCGGCAUCuGGuc-GCACAAGCUGCa -3'
miRNA:   3'- gaGCCGUAG-CUugcCGUGUUCGACGa -5'
24328 5' -54.8 NC_005263.2 + 14157 0.72 0.331985
Target:  5'- cCUUGGCGacuUCGGgccgGCGGCcggugugcGCGAGCUGCg -3'
miRNA:   3'- -GAGCCGU---AGCU----UGCCG--------UGUUCGACGa -5'
24328 5' -54.8 NC_005263.2 + 38683 0.72 0.340302
Target:  5'- aUCGGCc-CGGGCGGCACGGGCa--- -3'
miRNA:   3'- gAGCCGuaGCUUGCCGUGUUCGacga -5'
24328 5' -54.8 NC_005263.2 + 10157 0.72 0.340302
Target:  5'- -gCGGCAUCGGcCGGUugcGCAccGGCUGCc -3'
miRNA:   3'- gaGCCGUAGCUuGCCG---UGU--UCGACGa -5'
24328 5' -54.8 NC_005263.2 + 13085 0.72 0.34877
Target:  5'- -cCGGUGUCGGACGGC---AGCUGUa -3'
miRNA:   3'- gaGCCGUAGCUUGCCGuguUCGACGa -5'
24328 5' -54.8 NC_005263.2 + 16422 0.71 0.38412
Target:  5'- aCUCGGCGUCGGcGCuGGCGCGgcgGGCcucGCUg -3'
miRNA:   3'- -GAGCCGUAGCU-UG-CCGUGU---UCGa--CGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.