miRNA display CGI


Results 21 - 40 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24329 3' -57.7 NC_005263.2 + 17843 0.67 0.484613
Target:  5'- ----gAUUGCGCaGCGCuUCGCCGAc -3'
miRNA:   3'- gcaugUAGCGCGaCGCGcAGCGGCUu -5'
24329 3' -57.7 NC_005263.2 + 18775 0.67 0.464429
Target:  5'- gGUGC-UCGCGCUGguuauCGUGcUCGCCGc- -3'
miRNA:   3'- gCAUGuAGCGCGAC-----GCGC-AGCGGCuu -5'
24329 3' -57.7 NC_005263.2 + 18869 0.68 0.406682
Target:  5'- gCGUGCcucggCGCGCcGCuGCG-CGCCGAc -3'
miRNA:   3'- -GCAUGua---GCGCGaCG-CGCaGCGGCUu -5'
24329 3' -57.7 NC_005263.2 + 19061 0.66 0.547449
Target:  5'- aCGcGCcgCGCGgcCUGCGCG-CGCUGGu -3'
miRNA:   3'- -GCaUGuaGCGC--GACGCGCaGCGGCUu -5'
24329 3' -57.7 NC_005263.2 + 19090 0.66 0.530401
Target:  5'- --gGCGUCGCGgUGCGCaacgcacugccggucGgccgCGCCGAg -3'
miRNA:   3'- gcaUGUAGCGCgACGCG---------------Ca---GCGGCUu -5'
24329 3' -57.7 NC_005263.2 + 19132 0.7 0.337097
Target:  5'- --cGCAUCgccggGCGCuUGCGCGUCGUCGu- -3'
miRNA:   3'- gcaUGUAG-----CGCG-ACGCGCAGCGGCuu -5'
24329 3' -57.7 NC_005263.2 + 19163 0.7 0.298211
Target:  5'- cCGUGCAUC-CGCcgGCGCGgcUCGUCGGc -3'
miRNA:   3'- -GCAUGUAGcGCGa-CGCGC--AGCGGCUu -5'
24329 3' -57.7 NC_005263.2 + 20215 0.68 0.388457
Target:  5'- aGUGCuUUGCccgaCUGCGCGcCGCCGGc -3'
miRNA:   3'- gCAUGuAGCGc---GACGCGCaGCGGCUu -5'
24329 3' -57.7 NC_005263.2 + 20982 0.67 0.444692
Target:  5'- --cGCGgcugCGCGcCUGCGCGUCgacguGCCGGc -3'
miRNA:   3'- gcaUGUa---GCGC-GACGCGCAG-----CGGCUu -5'
24329 3' -57.7 NC_005263.2 + 21387 0.67 0.484613
Target:  5'- gGUGCGcuUCGCGCUGCcGCag-GCCGGc -3'
miRNA:   3'- gCAUGU--AGCGCGACG-CGcagCGGCUu -5'
24329 3' -57.7 NC_005263.2 + 22212 0.74 0.181949
Target:  5'- aCGUACGUCGCG--GC-CGUCGCCGGc -3'
miRNA:   3'- -GCAUGUAGCGCgaCGcGCAGCGGCUu -5'
24329 3' -57.7 NC_005263.2 + 25553 0.68 0.415994
Target:  5'- aGUugAUCGCGa-GCGCGaCGUCGGc -3'
miRNA:   3'- gCAugUAGCGCgaCGCGCaGCGGCUu -5'
24329 3' -57.7 NC_005263.2 + 25643 0.68 0.397503
Target:  5'- aGUugAUCGCGCUGuCGC--UGCCGu- -3'
miRNA:   3'- gCAugUAGCGCGAC-GCGcaGCGGCuu -5'
24329 3' -57.7 NC_005263.2 + 26472 0.68 0.435002
Target:  5'- aGUGcCAUa-CGCcGCGCGUCGCCGc- -3'
miRNA:   3'- gCAU-GUAgcGCGaCGCGCAGCGGCuu -5'
24329 3' -57.7 NC_005263.2 + 27128 0.66 0.515645
Target:  5'- aCGcGCAggCGCGCaGcCGCGUCGgCGAu -3'
miRNA:   3'- -GCaUGUa-GCGCGaC-GCGCAGCgGCUu -5'
24329 3' -57.7 NC_005263.2 + 27265 0.66 0.558192
Target:  5'- --cGCGUCGaauuggccCGaCUGCGCGagGCCGAGc -3'
miRNA:   3'- gcaUGUAGC--------GC-GACGCGCagCGGCUU- -5'
24329 3' -57.7 NC_005263.2 + 27979 0.69 0.370777
Target:  5'- cCGUAcCGUCGCGCuugccguaacccUGCGCGgcgaCGCUGGu -3'
miRNA:   3'- -GCAU-GUAGCGCG------------ACGCGCa---GCGGCUu -5'
24329 3' -57.7 NC_005263.2 + 28709 0.72 0.243379
Target:  5'- gCGcGCGUUGCcguaCUGCGCGcCGCCGAGg -3'
miRNA:   3'- -GCaUGUAGCGc---GACGCGCaGCGGCUU- -5'
24329 3' -57.7 NC_005263.2 + 29018 0.69 0.345304
Target:  5'- aGUGCGUUGCGCacCGCGaCGCCGu- -3'
miRNA:   3'- gCAUGUAGCGCGacGCGCaGCGGCuu -5'
24329 3' -57.7 NC_005263.2 + 30347 0.66 0.515645
Target:  5'- gCGUGCcgagcgcggcCGCGCUGcCGCcggCGCCGAGu -3'
miRNA:   3'- -GCAUGua--------GCGCGAC-GCGca-GCGGCUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.